Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31000 | 5' | -57 | NC_006560.1 | + | 45623 | 0.68 | 0.811509 |
Target: 5'- gUCCUCGGcGCGCuucgggacGAacgcGGGUGCCUCg -3' miRNA: 3'- gAGGAGCCaUGCG--------CUa---CUCGCGGAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 103021 | 0.68 | 0.811509 |
Target: 5'- cCUCCgcgccCGGUcgACGCGcgGGGCGCgggcggCCg -3' miRNA: 3'- -GAGGa----GCCA--UGCGCuaCUCGCGga----GG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 107756 | 0.68 | 0.802814 |
Target: 5'- -aCCa-GGUGCGCGGcgagGAGCGCggCCa -3' miRNA: 3'- gaGGagCCAUGCGCUa---CUCGCGgaGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 102693 | 0.68 | 0.802814 |
Target: 5'- gCUCCUgGcGUcgGCGaCGAUGaAGCGCCUg- -3' miRNA: 3'- -GAGGAgC-CA--UGC-GCUAC-UCGCGGAgg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 102437 | 0.68 | 0.801056 |
Target: 5'- cCUCCUCGGccgcCGCGGccgccgucuccAGgGCCUCCa -3' miRNA: 3'- -GAGGAGCCau--GCGCUac---------UCgCGGAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 47263 | 0.68 | 0.793969 |
Target: 5'- -gCCUCGGcgcCGCGGacccgaaaGAGCGCCUgCg -3' miRNA: 3'- gaGGAGCCau-GCGCUa-------CUCGCGGAgG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 84692 | 0.68 | 0.793969 |
Target: 5'- -gCCUgCGGcGCggGCGAcGGGCGCCUCg -3' miRNA: 3'- gaGGA-GCCaUG--CGCUaCUCGCGGAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 127556 | 0.68 | 0.793969 |
Target: 5'- -gCC-CGGUACGCGucGAGCGUgUCg -3' miRNA: 3'- gaGGaGCCAUGCGCuaCUCGCGgAGg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 124852 | 0.68 | 0.775863 |
Target: 5'- gUCCUCGuGgACGCGcacacgggcaugGUGGGCGCgUCUc -3' miRNA: 3'- gAGGAGC-CaUGCGC------------UACUCGCGgAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 15354 | 0.69 | 0.761016 |
Target: 5'- -gCCggGGU-CGCGGUGAGgccgggacuccccccCGCCUCCu -3' miRNA: 3'- gaGGagCCAuGCGCUACUC---------------GCGGAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 17815 | 0.69 | 0.737263 |
Target: 5'- uUCCUCGGUcgcgcccgcguagACGCGGcgGAGCugucgGCCggCCa -3' miRNA: 3'- gAGGAGCCA-------------UGCGCUa-CUCG-----CGGa-GG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 92473 | 0.69 | 0.718833 |
Target: 5'- cCUCCUcCGGccCGUGAUGGccgcGCGCC-CCa -3' miRNA: 3'- -GAGGA-GCCauGCGCUACU----CGCGGaGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 125516 | 0.7 | 0.709025 |
Target: 5'- cCUCCgcgcCGGc-CGCGGUGcGCGCCgCCg -3' miRNA: 3'- -GAGGa---GCCauGCGCUACuCGCGGaGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 76687 | 0.7 | 0.709025 |
Target: 5'- gCUUCgggCGaGUGCGCGG-GGGCGCCUg- -3' miRNA: 3'- -GAGGa--GC-CAUGCGCUaCUCGCGGAgg -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 34995 | 0.7 | 0.689227 |
Target: 5'- -gCCUCGGggcCGCGGgccggccGGGCGCCcccUCCg -3' miRNA: 3'- gaGGAGCCau-GCGCUa------CUCGCGG---AGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 136591 | 0.7 | 0.679255 |
Target: 5'- uCUCCUCgcacaaggaGGUgaGCGCcuacAUGGcGCGCCUCCa -3' miRNA: 3'- -GAGGAG---------CCA--UGCGc---UACU-CGCGGAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 7078 | 0.7 | 0.669245 |
Target: 5'- -aCCUCGcGgccCGCGAgaccGCGCCUCCu -3' miRNA: 3'- gaGGAGC-Cau-GCGCUacu-CGCGGAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 131552 | 0.71 | 0.649146 |
Target: 5'- -aCCUggCGGUcUGCGGgaacgaGGGCGCCUCCc -3' miRNA: 3'- gaGGA--GCCAuGCGCUa-----CUCGCGGAGG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 3297 | 0.71 | 0.639073 |
Target: 5'- -gCCgggCGGgcggGCGGUGAGCGCCgcgggCCg -3' miRNA: 3'- gaGGa--GCCaug-CGCUACUCGCGGa----GG- -5' |
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31000 | 5' | -57 | NC_006560.1 | + | 12344 | 0.71 | 0.618919 |
Target: 5'- -aCCUCGGggcugGCGgGgcGGGCGUCUCg -3' miRNA: 3'- gaGGAGCCa----UGCgCuaCUCGCGGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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