miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31001 3' -59.2 NC_006560.1 + 137763 1.08 0.001626
Target:  5'- gGAGCUGGCCAUGGCCACGAACGCCGAc -3'
miRNA:   3'- -CUCGACCGGUACCGGUGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 75579 0.8 0.126494
Target:  5'- cGAGCgGGCgcUGGCgGCGAACGCCGAg -3'
miRNA:   3'- -CUCGaCCGguACCGgUGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 65041 0.8 0.131111
Target:  5'- gGAGCggGGCCGggcgcgggggcaggGGCCGCGggUGCCGAu -3'
miRNA:   3'- -CUCGa-CCGGUa-------------CCGGUGCuuGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 26933 0.8 0.140099
Target:  5'- cGGGgaGGCCGcggGGCCGCGGAgGCCGGg -3'
miRNA:   3'- -CUCgaCCGGUa--CCGGUGCUUgCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 70450 0.8 0.143704
Target:  5'- uGGCgGGCCugcgGGCCGCGAuCGCCGAg -3'
miRNA:   3'- cUCGaCCGGua--CCGGUGCUuGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 111365 0.78 0.180142
Target:  5'- -cGCgUGGCCcgGGCCACGcugGugGCCGAg -3'
miRNA:   3'- cuCG-ACCGGuaCCGGUGC---UugCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 114048 0.76 0.230009
Target:  5'- cGGC-GGCCGUGGCCACGGcggccgugcGCGCCc- -3'
miRNA:   3'- cUCGaCCGGUACCGGUGCU---------UGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 25391 0.76 0.23559
Target:  5'- gGAGCUGGCCccGGCCcCGAGCcCCGc -3'
miRNA:   3'- -CUCGACCGGuaCCGGuGCUUGcGGCu -5'
31001 3' -59.2 NC_006560.1 + 77573 0.76 0.23559
Target:  5'- cAGCcGGCCuggcgcgacucgGUGGCCGCGGcCGCCGAg -3'
miRNA:   3'- cUCGaCCGG------------UACCGGUGCUuGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 115582 0.76 0.241285
Target:  5'- cAGCUGGC---GGCCGUGAACGCCGAg -3'
miRNA:   3'- cUCGACCGguaCCGGUGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 83463 0.76 0.247094
Target:  5'- aGAGCUGcugcacgcgcGCCGUGGCgCGC-AACGCCGAg -3'
miRNA:   3'- -CUCGAC----------CGGUACCG-GUGcUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 25174 0.76 0.247094
Target:  5'- -cGCUGGaCCGcgcGGCCGCGcGCGCCGGg -3'
miRNA:   3'- cuCGACC-GGUa--CCGGUGCuUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 64842 0.76 0.253019
Target:  5'- gGAGCaGGCUggGGUCGCGcGCGCCGGc -3'
miRNA:   3'- -CUCGaCCGGuaCCGGUGCuUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 73601 0.75 0.277889
Target:  5'- cGAGgaGGCCcgGGCCGC---CGCCGAg -3'
miRNA:   3'- -CUCgaCCGGuaCCGGUGcuuGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 23587 0.75 0.277889
Target:  5'- cGGGCUGGC---GGCCGCGcGCGCCGc -3'
miRNA:   3'- -CUCGACCGguaCCGGUGCuUGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 38898 0.75 0.284403
Target:  5'- cGGCccgGGCguUGGUCACGAACGUCGGu -3'
miRNA:   3'- cUCGa--CCGguACCGGUGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 39021 0.75 0.291038
Target:  5'- gGGGCUGuCCggGGCCGCGAAcugcguccCGCCGAa -3'
miRNA:   3'- -CUCGACcGGuaCCGGUGCUU--------GCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 131392 0.75 0.291038
Target:  5'- -uGCUGGCgGgcgcUGGCCGCGGACGCgCGc -3'
miRNA:   3'- cuCGACCGgU----ACCGGUGCUUGCG-GCu -5'
31001 3' -59.2 NC_006560.1 + 133139 0.74 0.297793
Target:  5'- uGGGC-GGCC-UGGCCGCGGcaGCGCgCGAa -3'
miRNA:   3'- -CUCGaCCGGuACCGGUGCU--UGCG-GCU- -5'
31001 3' -59.2 NC_006560.1 + 116957 0.74 0.304669
Target:  5'- aGAGgUcGGCCGUGcGCCGCaGGGCGCCGu -3'
miRNA:   3'- -CUCgA-CCGGUAC-CGGUG-CUUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.