miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31001 3' -59.2 NC_006560.1 + 1881 0.68 0.613207
Target:  5'- cGGGCgggGGUCGcgGGCgGCG-GCGCCGGc -3'
miRNA:   3'- -CUCGa--CCGGUa-CCGgUGCuUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 3247 0.71 0.448777
Target:  5'- uGGGCgGGCCcgGGCgGCGcgcGGCGCCa- -3'
miRNA:   3'- -CUCGaCCGGuaCCGgUGC---UUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 3420 0.67 0.693695
Target:  5'- cGGGCgGGCgGcGGgCGCGGGCGCCc- -3'
miRNA:   3'- -CUCGaCCGgUaCCgGUGCUUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 3542 0.69 0.573045
Target:  5'- aGAGCaGGUCGgcGGCgGCG-GCGCCGAc -3'
miRNA:   3'- -CUCGaCCGGUa-CCGgUGCuUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 3585 0.66 0.752179
Target:  5'- cGGGCUgcgGGCCAgcagcGG-CGCGGcgGCGCCGGc -3'
miRNA:   3'- -CUCGA---CCGGUa----CCgGUGCU--UGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 4146 0.71 0.448777
Target:  5'- uAGCggcGGCuCAUGGCCACGGcgGCGgCGGc -3'
miRNA:   3'- cUCGa--CCG-GUACCGGUGCU--UGCgGCU- -5'
31001 3' -59.2 NC_006560.1 + 4204 0.66 0.774642
Target:  5'- cGGC-GGCCAUGGCguagcccaggugcggCACGGcGCGCgCGAc -3'
miRNA:   3'- cUCGaCCGGUACCG---------------GUGCU-UGCG-GCU- -5'
31001 3' -59.2 NC_006560.1 + 4555 0.68 0.643497
Target:  5'- gGGGCUcGGCCccgGGCCAgGGcuCGCCGc -3'
miRNA:   3'- -CUCGA-CCGGua-CCGGUgCUu-GCGGCu -5'
31001 3' -59.2 NC_006560.1 + 4642 0.67 0.683722
Target:  5'- gGGGCacgGGCCGcGGCCGCGcg-GCCGu -3'
miRNA:   3'- -CUCGa--CCGGUaCCGGUGCuugCGGCu -5'
31001 3' -59.2 NC_006560.1 + 5153 0.72 0.396589
Target:  5'- gGGGCccgGGCCggGGCCGCGGGgGCgGGc -3'
miRNA:   3'- -CUCGa--CCGGuaCCGGUGCUUgCGgCU- -5'
31001 3' -59.2 NC_006560.1 + 8931 0.7 0.504542
Target:  5'- gGGGCgcggggGGCUuuuAUGcGCCGCgGGGCGCCGAc -3'
miRNA:   3'- -CUCGa-----CCGG---UAC-CGGUG-CUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 9552 0.67 0.673707
Target:  5'- cGGCggcGGCCAgccccagGGCCGCGccgaaGACGCCc- -3'
miRNA:   3'- cUCGa--CCGGUa------CCGGUGC-----UUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 11474 0.72 0.399945
Target:  5'- -cGCgUGGCCGUcagcucguaccgggaGGCCuCGGGCGCCGGg -3'
miRNA:   3'- cuCG-ACCGGUA---------------CCGGuGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 14315 0.68 0.633399
Target:  5'- aGGUUGGUCAccagcgcGGCCGCccaGGCGCCGAc -3'
miRNA:   3'- cUCGACCGGUa------CCGGUGc--UUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 14844 0.67 0.703619
Target:  5'- cGGCggggGGagCGUGGCgGcCGGGCGCCGGg -3'
miRNA:   3'- cUCGa---CCg-GUACCGgU-GCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 15242 0.66 0.770944
Target:  5'- -cGC-GGCCGgugcGGUCggggagGCGGACGCCGGg -3'
miRNA:   3'- cuCGaCCGGUa---CCGG------UGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 15298 0.71 0.45784
Target:  5'- cGGC-GGCgGUGGCCuCGGGCGCCc- -3'
miRNA:   3'- cUCGaCCGgUACCGGuGCUUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 15347 0.67 0.703619
Target:  5'- cGGCgcGGCCggGGUCGCGGugAgGCCGGg -3'
miRNA:   3'- cUCGa-CCGGuaCCGGUGCU--UgCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 15717 0.68 0.663659
Target:  5'- gGGGCggcgGGCCGgcacggGGCCG-GcACGCCGGg -3'
miRNA:   3'- -CUCGa---CCGGUa-----CCGGUgCuUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 15776 0.69 0.593071
Target:  5'- cGGGCccgggGGCCGgcagGGCC-CG-GCGCCGGc -3'
miRNA:   3'- -CUCGa----CCGGUa---CCGGuGCuUGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.