miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31001 3' -59.2 NC_006560.1 + 149487 0.66 0.761617
Target:  5'- cGGC-GGCCcgGGCCGacgcuccccgccCGGGcCGCCGGc -3'
miRNA:   3'- cUCGaCCGGuaCCGGU------------GCUU-GCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 147276 0.72 0.391588
Target:  5'- uGGC-GGCCggGGCCgggcggggggcucugGCGGGCGCCGGg -3'
miRNA:   3'- cUCGaCCGGuaCCGG---------------UGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 147011 0.68 0.663659
Target:  5'- -cGCggGGCCAccggGGCCACGGgggGCcCCGAg -3'
miRNA:   3'- cuCGa-CCGGUa---CCGGUGCU---UGcGGCU- -5'
31001 3' -59.2 NC_006560.1 + 146891 0.67 0.683722
Target:  5'- aGGGCcugGGCCAgGGCCGCcuGGGC-CCGGg -3'
miRNA:   3'- -CUCGa--CCGGUaCCGGUG--CUUGcGGCU- -5'
31001 3' -59.2 NC_006560.1 + 146753 0.68 0.653586
Target:  5'- uGAGUcugGGCCcgGGUCugGGcccGCGCCuGAg -3'
miRNA:   3'- -CUCGa--CCGGuaCCGGugCU---UGCGG-CU- -5'
31001 3' -59.2 NC_006560.1 + 146512 0.68 0.6233
Target:  5'- gGAGCUGcGCCGggcgGGCCG-GcGCGUCGGg -3'
miRNA:   3'- -CUCGAC-CGGUa---CCGGUgCuUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 146469 0.66 0.742637
Target:  5'- gGAGCggggGGCgGagcggcGGCCGCGAGCggagguGCCGGg -3'
miRNA:   3'- -CUCGa---CCGgUa-----CCGGUGCUUG------CGGCU- -5'
31001 3' -59.2 NC_006560.1 + 146230 0.68 0.653586
Target:  5'- aGGGC--GCCAUGGCgACG-ACGCuCGAg -3'
miRNA:   3'- -CUCGacCGGUACCGgUGCuUGCG-GCU- -5'
31001 3' -59.2 NC_006560.1 + 144862 0.67 0.713483
Target:  5'- gGGGCUGcccGCCgcccgcGUGGCCcUGAGCGCCc- -3'
miRNA:   3'- -CUCGAC---CGG------UACCGGuGCUUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 142708 0.67 0.713483
Target:  5'- cGGCcGGCCGcGGCCcCGAGgCGCCc- -3'
miRNA:   3'- cUCGaCCGGUaCCGGuGCUU-GCGGcu -5'
31001 3' -59.2 NC_006560.1 + 142082 0.68 0.633399
Target:  5'- cGGGCgGGCgG-GGCCGCG-GCGCgGAg -3'
miRNA:   3'- -CUCGaCCGgUaCCGGUGCuUGCGgCU- -5'
31001 3' -59.2 NC_006560.1 + 141504 0.69 0.563091
Target:  5'- -cGCUGGaCCccGGCCcCGAGCcCCGAg -3'
miRNA:   3'- cuCGACC-GGuaCCGGuGCUUGcGGCU- -5'
31001 3' -59.2 NC_006560.1 + 137763 1.08 0.001626
Target:  5'- gGAGCUGGCCAUGGCCACGAACGCCGAc -3'
miRNA:   3'- -CUCGACCGGUACCGGUGCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 137111 0.7 0.514133
Target:  5'- aAGCgGGCCcgGGCgUACGAGCGCaUGGg -3'
miRNA:   3'- cUCGaCCGGuaCCG-GUGCUUGCG-GCU- -5'
31001 3' -59.2 NC_006560.1 + 136028 0.66 0.761617
Target:  5'- cGAGUuccgGGCCcUGGCCGCgcugGAGCGCa-- -3'
miRNA:   3'- -CUCGa---CCGGuACCGGUG----CUUGCGgcu -5'
31001 3' -59.2 NC_006560.1 + 135409 0.71 0.45784
Target:  5'- -cGCUcGGCCAUGaCCACcgucggcgaGAGCGCCGGa -3'
miRNA:   3'- cuCGA-CCGGUACcGGUG---------CUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 135213 0.67 0.693695
Target:  5'- cAGCUGGCg--GGUCGCGGccuCGCUGGa -3'
miRNA:   3'- cUCGACCGguaCCGGUGCUu--GCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 135122 0.67 0.723281
Target:  5'- cGAGCcGGCgGgcGGCCACG--UGCCGGu -3'
miRNA:   3'- -CUCGaCCGgUa-CCGGUGCuuGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 134834 0.69 0.593071
Target:  5'- gGGGCaGGgCGUGGcCCGCGAggaACGCCu- -3'
miRNA:   3'- -CUCGaCCgGUACC-GGUGCU---UGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 133417 0.7 0.514133
Target:  5'- gGAGCUcggggcGGCCAUGGUCGCcccgGCCGAc -3'
miRNA:   3'- -CUCGA------CCGGUACCGGUGcuugCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.