miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31001 5' -52.5 NC_006560.1 + 136324 0.66 0.985882
Target:  5'- aGCUCaGGUGCUcgaucCGCCAgaGCGAgaacgugcUCACGu -3'
miRNA:   3'- -CGAG-CUACGA-----GCGGUacUGCU--------AGUGC- -5'
31001 5' -52.5 NC_006560.1 + 131525 0.66 0.985882
Target:  5'- gGCUCGAggcgGCg-GCCGgcgacguggaccUGGCGGUCuGCGg -3'
miRNA:   3'- -CGAGCUa---CGagCGGU------------ACUGCUAG-UGC- -5'
31001 5' -52.5 NC_006560.1 + 34452 0.66 0.985882
Target:  5'- gGCggCGGUGgUCGCgGggGGCGuUCGCGg -3'
miRNA:   3'- -CGa-GCUACgAGCGgUa-CUGCuAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 49232 0.66 0.985882
Target:  5'- cGUUCGcgaccgGCUCGCCGcGGCGG-CGCc -3'
miRNA:   3'- -CGAGCua----CGAGCGGUaCUGCUaGUGc -5'
31001 5' -52.5 NC_006560.1 + 58690 0.66 0.985364
Target:  5'- uGCUCGgcGCggcgcccuccucccUCGCCGcGAaGGUCACGc -3'
miRNA:   3'- -CGAGCuaCG--------------AGCGGUaCUgCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 239 0.66 0.985364
Target:  5'- gGCUCGGUGCggGCCccaacugcgucucgGUGGaggccgGGUCGCGa -3'
miRNA:   3'- -CGAGCUACGagCGG--------------UACUg-----CUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 147972 0.66 0.9841
Target:  5'- aGCUCGGcguccgUGUcggCGUCGgaggcggGGCGGUCGCGg -3'
miRNA:   3'- -CGAGCU------ACGa--GCGGUa------CUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 82236 0.66 0.9841
Target:  5'- aGUUCGGcgUGCgCGCaCGgcGGCGGUCGCGu -3'
miRNA:   3'- -CGAGCU--ACGaGCG-GUa-CUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 38730 0.66 0.982154
Target:  5'- uCUCGAggacgGCcccgGCCGUGGCGAUgAUGg -3'
miRNA:   3'- cGAGCUa----CGag--CGGUACUGCUAgUGC- -5'
31001 5' -52.5 NC_006560.1 + 19721 0.66 0.982154
Target:  5'- cGCcgUGAUGCUCGCgCGggGACGGggGCa -3'
miRNA:   3'- -CGa-GCUACGAGCG-GUa-CUGCUagUGc -5'
31001 5' -52.5 NC_006560.1 + 9779 0.66 0.980033
Target:  5'- aGCcCGccGCUCGCCucggaGGCG-UCGCGg -3'
miRNA:   3'- -CGaGCuaCGAGCGGua---CUGCuAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 119662 0.66 0.97773
Target:  5'- cGC-CGAcGCggaCGCCGUGGCGuccGUCGCc -3'
miRNA:   3'- -CGaGCUaCGa--GCGGUACUGC---UAGUGc -5'
31001 5' -52.5 NC_006560.1 + 33765 0.66 0.97773
Target:  5'- cGCUCGcgGgUCGCCucgcggggccGUGGgGcgCGCGa -3'
miRNA:   3'- -CGAGCuaCgAGCGG----------UACUgCuaGUGC- -5'
31001 5' -52.5 NC_006560.1 + 63595 0.66 0.97773
Target:  5'- uGC-CGGUGgUgGCCGcGGCGcgCACGa -3'
miRNA:   3'- -CGaGCUACgAgCGGUaCUGCuaGUGC- -5'
31001 5' -52.5 NC_006560.1 + 22000 0.67 0.975237
Target:  5'- cGCUCGGcggcgcggGCUCGCCGgacccgGACGAcgGCc -3'
miRNA:   3'- -CGAGCUa-------CGAGCGGUa-----CUGCUagUGc -5'
31001 5' -52.5 NC_006560.1 + 78816 0.67 0.96935
Target:  5'- uCUCGccggGCUCGCCGcgaagGACGAcccuucuUCGCGc -3'
miRNA:   3'- cGAGCua--CGAGCGGUa----CUGCU-------AGUGC- -5'
31001 5' -52.5 NC_006560.1 + 35766 0.67 0.963219
Target:  5'- aGCUCGGUGUuccuUCGCC-UGACGccCGgGa -3'
miRNA:   3'- -CGAGCUACG----AGCGGuACUGCuaGUgC- -5'
31001 5' -52.5 NC_006560.1 + 127477 0.68 0.959671
Target:  5'- cGCgcgCGAgacggGCUCGCCGcccGCGggCGCGg -3'
miRNA:   3'- -CGa--GCUa----CGAGCGGUac-UGCuaGUGC- -5'
31001 5' -52.5 NC_006560.1 + 126491 0.68 0.959671
Target:  5'- gGUgCGGUGCUCGCgGUGguagagguagGCGcgCACGc -3'
miRNA:   3'- -CGaGCUACGAGCGgUAC----------UGCuaGUGC- -5'
31001 5' -52.5 NC_006560.1 + 86148 0.68 0.955893
Target:  5'- cGCgcgaGAUGUgcgcCGCCAUG-CGGUCGCc -3'
miRNA:   3'- -CGag--CUACGa---GCGGUACuGCUAGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.