miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31001 5' -52.5 NC_006560.1 + 147972 0.66 0.9841
Target:  5'- aGCUCGGcguccgUGUcggCGUCGgaggcggGGCGGUCGCGg -3'
miRNA:   3'- -CGAGCU------ACGa--GCGGUa------CUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 142949 0.69 0.933431
Target:  5'- cCUCGA-GCUCGCgA-GGCGAcgCGCGg -3'
miRNA:   3'- cGAGCUaCGAGCGgUaCUGCUa-GUGC- -5'
31001 5' -52.5 NC_006560.1 + 137800 1.11 0.005211
Target:  5'- aGCUCGAUGCUCGCCAUGACGAUCACGc -3'
miRNA:   3'- -CGAGCUACGAGCGGUACUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 136324 0.66 0.985882
Target:  5'- aGCUCaGGUGCUcgaucCGCCAgaGCGAgaacgugcUCACGu -3'
miRNA:   3'- -CGAG-CUACGA-----GCGGUacUGCU--------AGUGC- -5'
31001 5' -52.5 NC_006560.1 + 135112 0.7 0.898387
Target:  5'- cGCUCGG-GCUCgaGCCGgcgGGCGGcCACGu -3'
miRNA:   3'- -CGAGCUaCGAG--CGGUa--CUGCUaGUGC- -5'
31001 5' -52.5 NC_006560.1 + 131525 0.66 0.985882
Target:  5'- gGCUCGAggcgGCg-GCCGgcgacguggaccUGGCGGUCuGCGg -3'
miRNA:   3'- -CGAGCUa---CGagCGGU------------ACUGCUAG-UGC- -5'
31001 5' -52.5 NC_006560.1 + 127477 0.68 0.959671
Target:  5'- cGCgcgCGAgacggGCUCGCCGcccGCGggCGCGg -3'
miRNA:   3'- -CGa--GCUa----CGAGCGGUac-UGCuaGUGC- -5'
31001 5' -52.5 NC_006560.1 + 126491 0.68 0.959671
Target:  5'- gGUgCGGUGCUCGCgGUGguagagguagGCGcgCACGc -3'
miRNA:   3'- -CGaGCUACGAGCGgUAC----------UGCuaGUGC- -5'
31001 5' -52.5 NC_006560.1 + 121663 0.69 0.928205
Target:  5'- cGgUCuGGUGC-CGCCuggggGUGGCGGUCGCa -3'
miRNA:   3'- -CgAG-CUACGaGCGG-----UACUGCUAGUGc -5'
31001 5' -52.5 NC_006560.1 + 119662 0.66 0.97773
Target:  5'- cGC-CGAcGCggaCGCCGUGGCGuccGUCGCc -3'
miRNA:   3'- -CGaGCUaCGa--GCGGUACUGC---UAGUGc -5'
31001 5' -52.5 NC_006560.1 + 109164 0.7 0.884769
Target:  5'- --gCGAU-CUCGCCGggccGGCGGUCGCGu -3'
miRNA:   3'- cgaGCUAcGAGCGGUa---CUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 106407 0.74 0.728111
Target:  5'- aGCUCGAggcgcgccucgggcgGCUgGCCGcggaGGCGGUCGCGg -3'
miRNA:   3'- -CGAGCUa--------------CGAgCGGUa---CUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 89673 0.69 0.933431
Target:  5'- uCUCGAUGCUgucggcccggagCGCCGacgccgacgcGGCGGUCGCGc -3'
miRNA:   3'- cGAGCUACGA------------GCGGUa---------CUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 86148 0.68 0.955893
Target:  5'- cGCgcgaGAUGUgcgcCGCCAUG-CGGUCGCc -3'
miRNA:   3'- -CGag--CUACGa---GCGGUACuGCUAGUGc -5'
31001 5' -52.5 NC_006560.1 + 82236 0.66 0.9841
Target:  5'- aGUUCGGcgUGCgCGCaCGgcGGCGGUCGCGu -3'
miRNA:   3'- -CGAGCU--ACGaGCG-GUa-CUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 78816 0.67 0.96935
Target:  5'- uCUCGccggGCUCGCCGcgaagGACGAcccuucuUCGCGc -3'
miRNA:   3'- cGAGCua--CGAGCGGUa----CUGCU-------AGUGC- -5'
31001 5' -52.5 NC_006560.1 + 78356 0.69 0.928205
Target:  5'- cGCcCGAccccGCggCGCgCGUGACGGUCAUGg -3'
miRNA:   3'- -CGaGCUa---CGa-GCG-GUACUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 75090 0.7 0.904839
Target:  5'- cCUCGAcGCcCGCag-GGCGAUCGCGc -3'
miRNA:   3'- cGAGCUaCGaGCGguaCUGCUAGUGC- -5'
31001 5' -52.5 NC_006560.1 + 73040 0.7 0.884769
Target:  5'- gGC-CGAgUGCUCGCgGcUGACGGUCAaCGc -3'
miRNA:   3'- -CGaGCU-ACGAGCGgU-ACUGCUAGU-GC- -5'
31001 5' -52.5 NC_006560.1 + 63595 0.66 0.97773
Target:  5'- uGC-CGGUGgUgGCCGcGGCGcgCACGa -3'
miRNA:   3'- -CGaGCUACgAgCGGUaCUGCuaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.