miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31002 5' -55.4 NC_006560.1 + 112430 0.66 0.929697
Target:  5'- -gGCCCGGCgugGUGCAGGCcacGUGgcgcgUCg -3'
miRNA:   3'- ggUGGGCUGa--CGCGUUCGac-CACa----AG- -5'
31002 5' -55.4 NC_006560.1 + 93564 0.66 0.929697
Target:  5'- gCCGCCCGACcG-GCAgaggcGGCUGucGUUCg -3'
miRNA:   3'- -GGUGGGCUGaCgCGU-----UCGACcaCAAG- -5'
31002 5' -55.4 NC_006560.1 + 69522 0.66 0.929697
Target:  5'- gCACCUGGCgagccugcgGCGgGcGCUGGUGg-- -3'
miRNA:   3'- gGUGGGCUGa--------CGCgUuCGACCACaag -5'
31002 5' -55.4 NC_006560.1 + 94797 0.66 0.924349
Target:  5'- gCGCCUGGCgGCGCGGacaUGGUGgaCg -3'
miRNA:   3'- gGUGGGCUGaCGCGUUcg-ACCACaaG- -5'
31002 5' -55.4 NC_006560.1 + 22950 0.66 0.918759
Target:  5'- cCCGcCCCGugUGgGCGcccgAGCUGGg---- -3'
miRNA:   3'- -GGU-GGGCugACgCGU----UCGACCacaag -5'
31002 5' -55.4 NC_006560.1 + 128122 0.66 0.906856
Target:  5'- aCCGCCa-AC-GCGC-AGCUGGUGg-- -3'
miRNA:   3'- -GGUGGgcUGaCGCGuUCGACCACaag -5'
31002 5' -55.4 NC_006560.1 + 49639 0.66 0.906856
Target:  5'- gCACCCGAUc-CGCG-GCcccGGUGUUCg -3'
miRNA:   3'- gGUGGGCUGacGCGUuCGa--CCACAAG- -5'
31002 5' -55.4 NC_006560.1 + 112813 0.67 0.887224
Target:  5'- cCCACgUGgaggcGCUcGCGC-AGCUGGUGggCg -3'
miRNA:   3'- -GGUGgGC-----UGA-CGCGuUCGACCACaaG- -5'
31002 5' -55.4 NC_006560.1 + 21998 0.67 0.880219
Target:  5'- uCCGCUCGGCgGCGCGGGCUcgccGGa---- -3'
miRNA:   3'- -GGUGGGCUGaCGCGUUCGA----CCacaag -5'
31002 5' -55.4 NC_006560.1 + 68747 0.67 0.880219
Target:  5'- cUCACCCcGCUGaCGCGGGCcc-UGUUCa -3'
miRNA:   3'- -GGUGGGcUGAC-GCGUUCGaccACAAG- -5'
31002 5' -55.4 NC_006560.1 + 25118 0.67 0.880219
Target:  5'- gCACCgCGcCUGCGCGcGCUGGg---- -3'
miRNA:   3'- gGUGG-GCuGACGCGUuCGACCacaag -5'
31002 5' -55.4 NC_006560.1 + 76629 0.67 0.880219
Target:  5'- aCCGCCCuGCgGCGCucGCUGGa---- -3'
miRNA:   3'- -GGUGGGcUGaCGCGuuCGACCacaag -5'
31002 5' -55.4 NC_006560.1 + 94715 0.67 0.880219
Target:  5'- uCCGCCacgaGACgGCGguggcggccguCGAGCUGGcgcUGUUCg -3'
miRNA:   3'- -GGUGGg---CUGaCGC-----------GUUCGACC---ACAAG- -5'
31002 5' -55.4 NC_006560.1 + 114746 0.67 0.87299
Target:  5'- cCCGCCCuGCUGCGCAAGUa------- -3'
miRNA:   3'- -GGUGGGcUGACGCGUUCGaccacaag -5'
31002 5' -55.4 NC_006560.1 + 61460 0.67 0.87299
Target:  5'- gCACCCGcguacgcgguGCUGCgGCAcucaaagaAGUUGGUGUg- -3'
miRNA:   3'- gGUGGGC----------UGACG-CGU--------UCGACCACAag -5'
31002 5' -55.4 NC_006560.1 + 32707 0.67 0.865542
Target:  5'- uCCGCCCGAgggcGCGCGGGCccggGGUccgUCg -3'
miRNA:   3'- -GGUGGGCUga--CGCGUUCGa---CCAca-AG- -5'
31002 5' -55.4 NC_006560.1 + 10351 0.68 0.850015
Target:  5'- aCCACCCGACggGcCGCcgugGAGUUGG-GggCg -3'
miRNA:   3'- -GGUGGGCUGa-C-GCG----UUCGACCaCaaG- -5'
31002 5' -55.4 NC_006560.1 + 113646 0.68 0.84113
Target:  5'- gCGCCCGgcuuccccgcgggGCUGCGgGAGCUGGc---- -3'
miRNA:   3'- gGUGGGC-------------UGACGCgUUCGACCacaag -5'
31002 5' -55.4 NC_006560.1 + 103387 0.68 0.825241
Target:  5'- gUCGCCCGuuGCUcGCGCuuGCUGGcgGUUUc -3'
miRNA:   3'- -GGUGGGC--UGA-CGCGuuCGACCa-CAAG- -5'
31002 5' -55.4 NC_006560.1 + 122197 0.68 0.824386
Target:  5'- aCCugCUGAUUGCGCAccGGC-GGUaccuagaccccgcGUUCg -3'
miRNA:   3'- -GGugGGCUGACGCGU--UCGaCCA-------------CAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.