Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 136913 | 1.12 | 0.001827 |
Target: 5'- aCCACCCGACUGCGCAAGCUGGUGUUCg -3' miRNA: 3'- -GGUGGGCUGACGCGUUCGACCACAAG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 128122 | 0.66 | 0.906856 |
Target: 5'- aCCGCCa-AC-GCGC-AGCUGGUGg-- -3' miRNA: 3'- -GGUGGgcUGaCGCGuUCGACCACaag -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 122197 | 0.68 | 0.824386 |
Target: 5'- aCCugCUGAUUGCGCAccGGC-GGUaccuagaccccgcGUUCg -3' miRNA: 3'- -GGugGGCUGACGCGU--UCGaCCA-------------CAAG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 117832 | 0.68 | 0.816617 |
Target: 5'- gCCGCCCuGC-GCGUGAGCUGG-GggCc -3' miRNA: 3'- -GGUGGGcUGaCGCGUUCGACCaCaaG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 115827 | 0.68 | 0.816617 |
Target: 5'- gUCGCCUGGCUcGCGCAcgccgcgcAGCUGGg---- -3' miRNA: 3'- -GGUGGGCUGA-CGCGU--------UCGACCacaag -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 114746 | 0.67 | 0.87299 |
Target: 5'- cCCGCCCuGCUGCGCAAGUa------- -3' miRNA: 3'- -GGUGGGcUGACGCGUUCGaccacaag -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 114667 | 0.69 | 0.798868 |
Target: 5'- cCCGCCCGGgUGcCGCGAGCUcgucgaGGacccgugcgggcUGUUCc -3' miRNA: 3'- -GGUGGGCUgAC-GCGUUCGA------CC------------ACAAG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 113646 | 0.68 | 0.84113 |
Target: 5'- gCGCCCGgcuuccccgcgggGCUGCGgGAGCUGGc---- -3' miRNA: 3'- gGUGGGC-------------UGACGCgUUCGACCacaag -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 112813 | 0.67 | 0.887224 |
Target: 5'- cCCACgUGgaggcGCUcGCGC-AGCUGGUGggCg -3' miRNA: 3'- -GGUGgGC-----UGA-CGCGuUCGACCACaaG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 112703 | 0.68 | 0.824386 |
Target: 5'- aCACCCG-CUGCGCcgcguucgucaacGAcuacucGCUGGUGUccuUCa -3' miRNA: 3'- gGUGGGCuGACGCG-------------UU------CGACCACA---AG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 112430 | 0.66 | 0.929697 |
Target: 5'- -gGCCCGGCgugGUGCAGGCcacGUGgcgcgUCg -3' miRNA: 3'- ggUGGGCUGa--CGCGUUCGac-CACa----AG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 111824 | 0.72 | 0.620469 |
Target: 5'- aCCuggugaCCGuCgGCGaCAAGCUGGUGUUCc -3' miRNA: 3'- -GGug----GGCuGaCGC-GUUCGACCACAAG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 103387 | 0.68 | 0.825241 |
Target: 5'- gUCGCCCGuuGCUcGCGCuuGCUGGcgGUUUc -3' miRNA: 3'- -GGUGGGC--UGA-CGCGuuCGACCa-CAAG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 99344 | 0.69 | 0.798868 |
Target: 5'- gCCGCCUcccACUGCGCcGGCUGGg---- -3' miRNA: 3'- -GGUGGGc--UGACGCGuUCGACCacaag -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 94797 | 0.66 | 0.924349 |
Target: 5'- gCGCCUGGCgGCGCGGacaUGGUGgaCg -3' miRNA: 3'- gGUGGGCUGaCGCGUUcg-ACCACaaG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 94715 | 0.67 | 0.880219 |
Target: 5'- uCCGCCacgaGACgGCGguggcggccguCGAGCUGGcgcUGUUCg -3' miRNA: 3'- -GGUGGg---CUGaCGC-----------GUUCGACC---ACAAG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 94597 | 0.69 | 0.807823 |
Target: 5'- aCGCCCgGGCUGUaugccgucaGCGAGCUGcG-GUUCu -3' miRNA: 3'- gGUGGG-CUGACG---------CGUUCGAC-CaCAAG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 93564 | 0.66 | 0.929697 |
Target: 5'- gCCGCCCGACcG-GCAgaggcGGCUGucGUUCg -3' miRNA: 3'- -GGUGGGCUGaCgCGU-----UCGACcaCAAG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 90662 | 0.69 | 0.798868 |
Target: 5'- cCUACCUGGC-GCGCGccgccGGCcUGGUGggCg -3' miRNA: 3'- -GGUGGGCUGaCGCGU-----UCG-ACCACaaG- -5' |
|||||||
31002 | 5' | -55.4 | NC_006560.1 | + | 84483 | 0.69 | 0.780508 |
Target: 5'- gCGCCCG-CgaGCGCGAGCgguaccgcgGcGUGUUCg -3' miRNA: 3'- gGUGGGCuGa-CGCGUUCGa--------C-CACAAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home