miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 3' -55.9 NC_006560.1 + 77716 0.67 0.89296
Target:  5'- gCCGgcgGGCGCcCGGCGCccGCgcgUGAcCUUCa -3'
miRNA:   3'- -GGUa--CUGCGuGCCGCG--CGa--GCU-GAAG- -5'
31003 3' -55.9 NC_006560.1 + 103741 0.67 0.89296
Target:  5'- gCCAUGGCGCccguGCGGCcGgGUccuUCGGCcUCc -3'
miRNA:   3'- -GGUACUGCG----UGCCG-CgCG---AGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 42126 0.67 0.89296
Target:  5'- cCCcgGACGC-CaGCGC-CUCGGCgUCc -3'
miRNA:   3'- -GGuaCUGCGuGcCGCGcGAGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 53476 0.67 0.89296
Target:  5'- cCCGaGGcCGCgGCGGCGCGCgaggaCGACg-- -3'
miRNA:   3'- -GGUaCU-GCG-UGCCGCGCGa----GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 57739 0.67 0.89296
Target:  5'- cCCGggaggGGgGaCGCGGCGCGCgcgUCGGCg-- -3'
miRNA:   3'- -GGUa----CUgC-GUGCCGCGCG---AGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 77679 0.67 0.88623
Target:  5'- ---gGGCGCGCggagagGGCGCGCUCGccccGCUc- -3'
miRNA:   3'- gguaCUGCGUG------CCGCGCGAGC----UGAag -5'
31003 3' -55.9 NC_006560.1 + 134773 0.67 0.88623
Target:  5'- gCCAgcGCGCgcagggucgggGCGGCGCGCUCcACg-- -3'
miRNA:   3'- -GGUacUGCG-----------UGCCGCGCGAGcUGaag -5'
31003 3' -55.9 NC_006560.1 + 48873 0.67 0.88623
Target:  5'- uCCGgggGGCGCccgucuccGCGGCGCGCcgcgCGAgcUCa -3'
miRNA:   3'- -GGUa--CUGCG--------UGCCGCGCGa---GCUgaAG- -5'
31003 3' -55.9 NC_006560.1 + 128684 0.67 0.885544
Target:  5'- aCggGGCGgG-GGCGCGCUCGGagccgguCUUCa -3'
miRNA:   3'- gGuaCUGCgUgCCGCGCGAGCU-------GAAG- -5'
31003 3' -55.9 NC_006560.1 + 21611 0.67 0.879277
Target:  5'- gCCu--GCGCGCGGCGCcGC-CGGCcgCa -3'
miRNA:   3'- -GGuacUGCGUGCCGCG-CGaGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 101315 0.67 0.879277
Target:  5'- uCCAcGACGCGCcGCGCGggcgCGACggCg -3'
miRNA:   3'- -GGUaCUGCGUGcCGCGCga--GCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 112953 0.67 0.879277
Target:  5'- cUCAUGcgcCGCGCGGa--GCUCGACggUCa -3'
miRNA:   3'- -GGUACu--GCGUGCCgcgCGAGCUGa-AG- -5'
31003 3' -55.9 NC_006560.1 + 3737 0.67 0.879277
Target:  5'- gCCA-GGCGCGCGG-GCGCggcgcgggcgCGGCggCg -3'
miRNA:   3'- -GGUaCUGCGUGCCgCGCGa---------GCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 2634 0.67 0.872108
Target:  5'- ---aGACGUgGCGGCGCGCgaCGACg-- -3'
miRNA:   3'- gguaCUGCG-UGCCGCGCGa-GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 16806 0.67 0.872108
Target:  5'- gCCGUG-UGCACGGC-CGcCUCGAagaUCa -3'
miRNA:   3'- -GGUACuGCGUGCCGcGC-GAGCUga-AG- -5'
31003 3' -55.9 NC_006560.1 + 74487 0.67 0.872108
Target:  5'- ---aGGCGCGCGcGCGCGCcgaggCGGCc-- -3'
miRNA:   3'- gguaCUGCGUGC-CGCGCGa----GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 95262 0.67 0.872108
Target:  5'- gCCGUGuCGaacggcuuCGCGGCGCGCgugCGcUUUCg -3'
miRNA:   3'- -GGUACuGC--------GUGCCGCGCGa--GCuGAAG- -5'
31003 3' -55.9 NC_006560.1 + 2003 0.67 0.872108
Target:  5'- uCCAgGGCG-GCGGCGUcCUCGGCgUCg -3'
miRNA:   3'- -GGUaCUGCgUGCCGCGcGAGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 45725 0.67 0.872108
Target:  5'- cCCGcGGCGCA-GGCGCGCcgCGGgcUCg -3'
miRNA:   3'- -GGUaCUGCGUgCCGCGCGa-GCUgaAG- -5'
31003 3' -55.9 NC_006560.1 + 129848 0.67 0.869915
Target:  5'- cUCAUGGCGCacaagagggacuucGCggaGGCGCGCUucCGGCUg- -3'
miRNA:   3'- -GGUACUGCG--------------UG---CCGCGCGA--GCUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.