miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 3' -55.9 NC_006560.1 + 105016 0.66 0.911781
Target:  5'- gCAUG-CGCGCGGaacggGCGCUCcGCggCg -3'
miRNA:   3'- gGUACuGCGUGCCg----CGCGAGcUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 136098 0.66 0.911781
Target:  5'- gCGUucACGCACGGgGCGCUCcccGCgUUCa -3'
miRNA:   3'- gGUAc-UGCGUGCCgCGCGAGc--UG-AAG- -5'
31003 3' -55.9 NC_006560.1 + 20969 0.66 0.911781
Target:  5'- ---cGGC-CGCGGCGcCGC-CGGCUUUa -3'
miRNA:   3'- gguaCUGcGUGCCGC-GCGaGCUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 30565 0.66 0.911781
Target:  5'- ---cGGCGcCGCGGCGCGCgCG-CcUCg -3'
miRNA:   3'- gguaCUGC-GUGCCGCGCGaGCuGaAG- -5'
31003 3' -55.9 NC_006560.1 + 74449 0.66 0.911781
Target:  5'- ---cGGCGCGCGcGCGCGCgccaUCGAg--- -3'
miRNA:   3'- gguaCUGCGUGC-CGCGCG----AGCUgaag -5'
31003 3' -55.9 NC_006560.1 + 101706 0.66 0.911781
Target:  5'- ---cGGCG-GCGGCGCGgUUGACcUCg -3'
miRNA:   3'- gguaCUGCgUGCCGCGCgAGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 115453 0.66 0.911781
Target:  5'- aUCGUGGCGCGgcUGGUGgCGCgCGGCaUCc -3'
miRNA:   3'- -GGUACUGCGU--GCCGC-GCGaGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 84331 0.66 0.909392
Target:  5'- gUAUGACGacggggcccgcgaGCGGCGCGCcuccCGGCUc- -3'
miRNA:   3'- gGUACUGCg------------UGCCGCGCGa---GCUGAag -5'
31003 3' -55.9 NC_006560.1 + 16252 0.66 0.905738
Target:  5'- -gGUGGCGUagcaaugcgagGCGGCGCGCgcggaGACg-- -3'
miRNA:   3'- ggUACUGCG-----------UGCCGCGCGag---CUGaag -5'
31003 3' -55.9 NC_006560.1 + 1482 0.66 0.905738
Target:  5'- cCCAUcggaGGCGCGCGGCccaCGC-CGGCg-- -3'
miRNA:   3'- -GGUA----CUGCGUGCCGc--GCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 55015 0.66 0.905738
Target:  5'- gCggGGCGCGCGGaaagGCGCgCGGCg-- -3'
miRNA:   3'- gGuaCUGCGUGCCg---CGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 110593 0.66 0.905738
Target:  5'- aCCAccGCGUcugucGCGGC-CGCUCGGCUc- -3'
miRNA:   3'- -GGUacUGCG-----UGCCGcGCGAGCUGAag -5'
31003 3' -55.9 NC_006560.1 + 148969 0.66 0.905738
Target:  5'- gCgGUGGCGCGaccaacCGGCgGCGC-CGGCaUCa -3'
miRNA:   3'- -GgUACUGCGU------GCCG-CGCGaGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 127499 0.66 0.905121
Target:  5'- cCCGcGG-GCGCGGCGgaggcccUGCUCGACUg- -3'
miRNA:   3'- -GGUaCUgCGUGCCGC-------GCGAGCUGAag -5'
31003 3' -55.9 NC_006560.1 + 78344 0.66 0.905121
Target:  5'- uCCGcGGCGgcccgcccgacccCGCGGCGCGCgUGACggUCa -3'
miRNA:   3'- -GGUaCUGC-------------GUGCCGCGCGaGCUGa-AG- -5'
31003 3' -55.9 NC_006560.1 + 22905 0.66 0.899464
Target:  5'- cCCGagGugGCGgaGGCGCGC-CGGCg-- -3'
miRNA:   3'- -GGUa-CugCGUg-CCGCGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 43293 0.66 0.899464
Target:  5'- gCCGgucucgcgGACGUcgGCGGCGaugcgcCGCUCGACg-- -3'
miRNA:   3'- -GGUa-------CUGCG--UGCCGC------GCGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 52829 0.66 0.899464
Target:  5'- cCCAgcgcCGaCACGGCGCugcgGCUCGGCg-- -3'
miRNA:   3'- -GGUacu-GC-GUGCCGCG----CGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 53476 0.67 0.89296
Target:  5'- cCCGaGGcCGCgGCGGCGCGCgaggaCGACg-- -3'
miRNA:   3'- -GGUaCU-GCG-UGCCGCGCGa----GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 42126 0.67 0.89296
Target:  5'- cCCcgGACGC-CaGCGC-CUCGGCgUCc -3'
miRNA:   3'- -GGuaCUGCGuGcCGCGcGAGCUGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.