miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 3' -55.9 NC_006560.1 + 76395 0.72 0.642918
Target:  5'- gCCAaGACGCuggaccaGGCGCGCUCGGu--- -3'
miRNA:   3'- -GGUaCUGCGug-----CCGCGCGAGCUgaag -5'
31003 3' -55.9 NC_006560.1 + 137234 0.72 0.642918
Target:  5'- uUCAaGACGCugGGgGCGCgggCGGCg-- -3'
miRNA:   3'- -GGUaCUGCGugCCgCGCGa--GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 52343 0.71 0.653086
Target:  5'- gCCGUgGGCGCccuGCGGCaGCGCUcCGACg-- -3'
miRNA:   3'- -GGUA-CUGCG---UGCCG-CGCGA-GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 3137 0.71 0.653086
Target:  5'- aCAUGA-GCGCGGCGCGCcagGGCUc- -3'
miRNA:   3'- gGUACUgCGUGCCGCGCGag-CUGAag -5'
31003 3' -55.9 NC_006560.1 + 19407 0.71 0.653086
Target:  5'- gCcgGGCGagucgcCGCGGCgGCGCUCGGCUg- -3'
miRNA:   3'- gGuaCUGC------GUGCCG-CGCGAGCUGAag -5'
31003 3' -55.9 NC_006560.1 + 78042 0.71 0.673365
Target:  5'- gCCGUGGCGCGCGGCcccggagcugGCgGC-CGGCggCg -3'
miRNA:   3'- -GGUACUGCGUGCCG----------CG-CGaGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 88555 0.71 0.673365
Target:  5'- ---aGACGCGCGGgGCGCgccugaggCGGCcgUCg -3'
miRNA:   3'- gguaCUGCGUGCCgCGCGa-------GCUGa-AG- -5'
31003 3' -55.9 NC_006560.1 + 63596 0.71 0.673365
Target:  5'- gCCGgugGugGcCGCGGCGCGCaCGAUggCa -3'
miRNA:   3'- -GGUa--CugC-GUGCCGCGCGaGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 127681 0.71 0.683459
Target:  5'- ---cGACGCG-GGCGCGC-CGACgUCg -3'
miRNA:   3'- gguaCUGCGUgCCGCGCGaGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 1604 0.71 0.683459
Target:  5'- ---cGACGCGgcCGGCGCGCgcucugCgGGCUUCg -3'
miRNA:   3'- gguaCUGCGU--GCCGCGCGa-----G-CUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 21278 0.71 0.69351
Target:  5'- ---cGGCgGCGCGGCGCcCUCGACg-- -3'
miRNA:   3'- gguaCUG-CGUGCCGCGcGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 131967 0.71 0.69351
Target:  5'- gCCuu--CGCGCGGCGC-CUCGACg-- -3'
miRNA:   3'- -GGuacuGCGUGCCGCGcGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 5085 0.71 0.703511
Target:  5'- ---cGGCGUGCGGCGCGCcgcccggggUCGGCg-- -3'
miRNA:   3'- gguaCUGCGUGCCGCGCG---------AGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 2058 0.7 0.713453
Target:  5'- cCCAgcgcACGCGCGGCGCGg-CGGCggggUCc -3'
miRNA:   3'- -GGUac--UGCGUGCCGCGCgaGCUGa---AG- -5'
31003 3' -55.9 NC_006560.1 + 76586 0.7 0.713453
Target:  5'- gCAcgGGCGCcUGGaCGCGCUCGGCg-- -3'
miRNA:   3'- gGUa-CUGCGuGCC-GCGCGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 106296 0.7 0.713453
Target:  5'- uCC-UGACGCACGcgcGCGUGCUCGcCg-- -3'
miRNA:   3'- -GGuACUGCGUGC---CGCGCGAGCuGaag -5'
31003 3' -55.9 NC_006560.1 + 113825 0.7 0.721357
Target:  5'- cCCGUGGCGCuguaccaccagcuGCGGaCGgGCcugcaccccgggaUCGGCUUCa -3'
miRNA:   3'- -GGUACUGCG-------------UGCC-GCgCG-------------AGCUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 4432 0.7 0.733122
Target:  5'- cCCAcacgGGCGCG-GGCGCGCcggCGGCcUCg -3'
miRNA:   3'- -GGUa---CUGCGUgCCGCGCGa--GCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 121090 0.7 0.733122
Target:  5'- -aGUGACGCACGGC-CGCgUCG-CUg- -3'
miRNA:   3'- ggUACUGCGUGCCGcGCG-AGCuGAag -5'
31003 3' -55.9 NC_006560.1 + 127148 0.7 0.742831
Target:  5'- aCCAUG-CGgguCGCGGCGUcgaGCUCGGCggCg -3'
miRNA:   3'- -GGUACuGC---GUGCCGCG---CGAGCUGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.