miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 3' -55.9 NC_006560.1 + 130004 1.12 0.00198
Target:  5'- cCCAUGACGCACGGCGCGCUCGACUUCa -3'
miRNA:   3'- -GGUACUGCGUGCCGCGCGAGCUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 66901 0.79 0.295349
Target:  5'- ----cGCGCGCGGCGUGCUCGGCg-- -3'
miRNA:   3'- gguacUGCGUGCCGCGCGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 4677 0.78 0.307129
Target:  5'- cCCGUGGCGUcgcgcccggccacgGCGGCGCGCgcgCGGCggCg -3'
miRNA:   3'- -GGUACUGCG--------------UGCCGCGCGa--GCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 85826 0.78 0.331011
Target:  5'- gUCGUGAUGCGcCGGUGCGCgUCGACg-- -3'
miRNA:   3'- -GGUACUGCGU-GCCGCGCG-AGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 92969 0.78 0.333997
Target:  5'- cCCA-GACGgGCGGCgcggacgucggggagGCGUUCGACUUCg -3'
miRNA:   3'- -GGUaCUGCgUGCCG---------------CGCGAGCUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 4209 0.77 0.343837
Target:  5'- gCCAUGGCguagcccaggugcgGCACGGCGCGCgCGACc-- -3'
miRNA:   3'- -GGUACUG--------------CGUGCCGCGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 121943 0.75 0.474497
Target:  5'- gCCcgGGCGCGCGGCucuGCGC-CGGCg-- -3'
miRNA:   3'- -GGuaCUGCGUGCCG---CGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 103029 0.74 0.493386
Target:  5'- cCCGgucGACGCGCGGgGCGCgggCGGCcgcUCg -3'
miRNA:   3'- -GGUa--CUGCGUGCCgCGCGa--GCUGa--AG- -5'
31003 3' -55.9 NC_006560.1 + 75356 0.74 0.512611
Target:  5'- ---cGACGCgGCGGCGCGC-CGACg-- -3'
miRNA:   3'- gguaCUGCG-UGCCGCGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 71734 0.74 0.52234
Target:  5'- cCCGUcGGgGCGCGGCcuGCGCUgCGugUUCu -3'
miRNA:   3'- -GGUA-CUgCGUGCCG--CGCGA-GCugAAG- -5'
31003 3' -55.9 NC_006560.1 + 81537 0.73 0.542003
Target:  5'- ---cGGCGCGCcagGGCGUGCUCGGCcgCg -3'
miRNA:   3'- gguaCUGCGUG---CCGCGCGAGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 127829 0.73 0.551927
Target:  5'- cCCA-GACGCugGCGGCGCGCUuCGcCgcgUCa -3'
miRNA:   3'- -GGUaCUGCG--UGCCGCGCGA-GCuGa--AG- -5'
31003 3' -55.9 NC_006560.1 + 24587 0.73 0.561905
Target:  5'- ---cGGCGCugGGCGCGCagGGCg-- -3'
miRNA:   3'- gguaCUGCGugCCGCGCGagCUGaag -5'
31003 3' -55.9 NC_006560.1 + 25076 0.72 0.592105
Target:  5'- ---cGcCGC-CGGCGCGCcCGACUUCc -3'
miRNA:   3'- gguaCuGCGuGCCGCGCGaGCUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 102935 0.72 0.612394
Target:  5'- aCCGgggcGGCgGCGCGGUGCGCgCGGCUcacUCg -3'
miRNA:   3'- -GGUa---CUG-CGUGCCGCGCGaGCUGA---AG- -5'
31003 3' -55.9 NC_006560.1 + 85236 0.72 0.612394
Target:  5'- uCCGUGACGC-CGGCGCcCgCGGCg-- -3'
miRNA:   3'- -GGUACUGCGuGCCGCGcGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 64409 0.72 0.622564
Target:  5'- uCCAUGAgGCGCGGCGUcggaccguGCUCcaGGCcgUCg -3'
miRNA:   3'- -GGUACUgCGUGCCGCG--------CGAG--CUGa-AG- -5'
31003 3' -55.9 NC_006560.1 + 128816 0.72 0.622564
Target:  5'- ---cGACGCGuCGGCGCGCgcCGACg-- -3'
miRNA:   3'- gguaCUGCGU-GCCGCGCGa-GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 78109 0.72 0.632741
Target:  5'- cCCcgGGCGCugGuggcggucaGCGUGCUCGGCcgCa -3'
miRNA:   3'- -GGuaCUGCGugC---------CGCGCGAGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 57949 0.72 0.639865
Target:  5'- cCCGUGcGCGCccGCGGCGCGCcuuauagcccccgcUCGGCg-- -3'
miRNA:   3'- -GGUAC-UGCG--UGCCGCGCG--------------AGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.