miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 3' -55.9 NC_006560.1 + 667 0.66 0.91759
Target:  5'- aCCccGGCGCgcccGCGGCGCggGCUCGuCg-- -3'
miRNA:   3'- -GGuaCUGCG----UGCCGCG--CGAGCuGaag -5'
31003 3' -55.9 NC_006560.1 + 1482 0.66 0.905738
Target:  5'- cCCAUcggaGGCGCGCGGCccaCGC-CGGCg-- -3'
miRNA:   3'- -GGUA----CUGCGUGCCGc--GCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 1604 0.71 0.683459
Target:  5'- ---cGACGCGgcCGGCGCGCgcucugCgGGCUUCg -3'
miRNA:   3'- gguaCUGCGU--GCCGCGCGa-----G-CUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 2003 0.67 0.872108
Target:  5'- uCCAgGGCG-GCGGCGUcCUCGGCgUCg -3'
miRNA:   3'- -GGUaCUGCgUGCCGCGcGAGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 2058 0.7 0.713453
Target:  5'- cCCAgcgcACGCGCGGCGCGg-CGGCggggUCc -3'
miRNA:   3'- -GGUac--UGCGUGCCGCGCgaGCUGa---AG- -5'
31003 3' -55.9 NC_006560.1 + 2634 0.67 0.872108
Target:  5'- ---aGACGUgGCGGCGCGCgaCGACg-- -3'
miRNA:   3'- gguaCUGCG-UGCCGCGCGa-GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 3137 0.71 0.653086
Target:  5'- aCAUGA-GCGCGGCGCGCcagGGCUc- -3'
miRNA:   3'- gGUACUgCGUGCCGCGCGag-CUGAag -5'
31003 3' -55.9 NC_006560.1 + 3622 0.68 0.82483
Target:  5'- aCGaGGCcCACGGCGCGCaCGGCggCg -3'
miRNA:   3'- gGUaCUGcGUGCCGCGCGaGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 3737 0.67 0.879277
Target:  5'- gCCA-GGCGCGCGG-GCGCggcgcgggcgCGGCggCg -3'
miRNA:   3'- -GGUaCUGCGUGCCgCGCGa---------GCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 3779 0.68 0.849344
Target:  5'- gCggGAC-CGCGGCGCGCgCGGCc-- -3'
miRNA:   3'- gGuaCUGcGUGCCGCGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 4155 0.66 0.923163
Target:  5'- cUCAUGGC-CACGGCG-GCggCGGCg-- -3'
miRNA:   3'- -GGUACUGcGUGCCGCgCGa-GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 4209 0.77 0.343837
Target:  5'- gCCAUGGCguagcccaggugcgGCACGGCGCGCgCGACc-- -3'
miRNA:   3'- -GGUACUG--------------CGUGCCGCGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 4403 0.69 0.780618
Target:  5'- --cUGGCGCGCGGCGUcgcccaGCUCGGg--- -3'
miRNA:   3'- gguACUGCGUGCCGCG------CGAGCUgaag -5'
31003 3' -55.9 NC_006560.1 + 4432 0.7 0.733122
Target:  5'- cCCAcacgGGCGCG-GGCGCGCcggCGGCcUCg -3'
miRNA:   3'- -GGUa---CUGCGUgCCGCGCGa--GCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 4677 0.78 0.307129
Target:  5'- cCCGUGGCGUcgcgcccggccacgGCGGCGCGCgcgCGGCggCg -3'
miRNA:   3'- -GGUACUGCG--------------UGCCGCGCGa--GCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 5085 0.71 0.703511
Target:  5'- ---cGGCGUGCGGCGCGCcgcccggggUCGGCg-- -3'
miRNA:   3'- gguaCUGCGUGCCGCGCG---------AGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 8947 0.66 0.911781
Target:  5'- uUAUG-CGcCGCGGgGCGC-CGACgUCa -3'
miRNA:   3'- gGUACuGC-GUGCCgCGCGaGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 9108 0.66 0.9285
Target:  5'- ----cGCGCGCGGCGCGCggcACgUCa -3'
miRNA:   3'- gguacUGCGUGCCGCGCGagcUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 10174 0.69 0.780618
Target:  5'- aCCGUGACGCcgugcACGuGCGCcacCUCGGCg-- -3'
miRNA:   3'- -GGUACUGCG-----UGC-CGCGc--GAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 10366 0.68 0.833185
Target:  5'- gCCGUGGaGUugGGgGCGCgCGACa-- -3'
miRNA:   3'- -GGUACUgCGugCCgCGCGaGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.