miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 3' -55.9 NC_006560.1 + 148969 0.66 0.905738
Target:  5'- gCgGUGGCGCGaccaacCGGCgGCGC-CGGCaUCa -3'
miRNA:   3'- -GgUACUGCGU------GCCG-CGCGaGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 147128 0.69 0.771347
Target:  5'- gCCGcGGCGCGaGGCGCGCgcgccgCGGCg-- -3'
miRNA:   3'- -GGUaCUGCGUgCCGCGCGa-----GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 146285 0.67 0.857135
Target:  5'- gCcgGACGCcgcgGgGGCGCGgUCGGCgUCc -3'
miRNA:   3'- gGuaCUGCG----UgCCGCGCgAGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 141763 0.69 0.798758
Target:  5'- cCCGcguUGGCGCGCGGCGagaGCggccgCGugUa- -3'
miRNA:   3'- -GGU---ACUGCGUGCCGCg--CGa----GCugAag -5'
31003 3' -55.9 NC_006560.1 + 137234 0.72 0.642918
Target:  5'- uUCAaGACGCugGGgGCGCgggCGGCg-- -3'
miRNA:   3'- -GGUaCUGCGugCCgCGCGa--GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 136098 0.66 0.911781
Target:  5'- gCGUucACGCACGGgGCGCUCcccGCgUUCa -3'
miRNA:   3'- gGUAc-UGCGUGCCgCGCGAGc--UG-AAG- -5'
31003 3' -55.9 NC_006560.1 + 135093 0.66 0.923163
Target:  5'- gCCGUaccGGCGCACcaGGCGCucggGCUCGAg--- -3'
miRNA:   3'- -GGUA---CUGCGUG--CCGCG----CGAGCUgaag -5'
31003 3' -55.9 NC_006560.1 + 134773 0.67 0.88623
Target:  5'- gCCAgcGCGCgcagggucgggGCGGCGCGCUCcACg-- -3'
miRNA:   3'- -GGUacUGCG-----------UGCCGCGCGAGcUGaag -5'
31003 3' -55.9 NC_006560.1 + 133549 0.67 0.857135
Target:  5'- gCCGgcGGCGCGCGGCGUgGCg-GACgUCg -3'
miRNA:   3'- -GGUa-CUGCGUGCCGCG-CGagCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 132907 0.66 0.923163
Target:  5'- ---cGACGUGCGGCG-GC-CGACggCg -3'
miRNA:   3'- gguaCUGCGUGCCGCgCGaGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 131967 0.71 0.69351
Target:  5'- gCCuu--CGCGCGGCGC-CUCGACg-- -3'
miRNA:   3'- -GGuacuGCGUGCCGCGcGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 131857 0.66 0.91759
Target:  5'- ---cGGCGaCGCGGCGCGCgcugCGggGCgcggUCg -3'
miRNA:   3'- gguaCUGC-GUGCCGCGCGa---GC--UGa---AG- -5'
31003 3' -55.9 NC_006560.1 + 130526 0.67 0.857135
Target:  5'- cCgGUGGCGCcgcGCGGCgccGCGCUgGGCg-- -3'
miRNA:   3'- -GgUACUGCG---UGCCG---CGCGAgCUGaag -5'
31003 3' -55.9 NC_006560.1 + 130384 0.68 0.816302
Target:  5'- cCUGUGGCGCGCGcuguacgcgaGCGCGCUggCGGCc-- -3'
miRNA:   3'- -GGUACUGCGUGC----------CGCGCGA--GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 130004 1.12 0.00198
Target:  5'- cCCAUGACGCACGGCGCGCUCGACUUCa -3'
miRNA:   3'- -GGUACUGCGUGCCGCGCGAGCUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 129848 0.67 0.869915
Target:  5'- cUCAUGGCGCacaagagggacuucGCggaGGCGCGCUucCGGCUg- -3'
miRNA:   3'- -GGUACUGCG--------------UG---CCGCGCGA--GCUGAag -5'
31003 3' -55.9 NC_006560.1 + 128816 0.72 0.622564
Target:  5'- ---cGACGCGuCGGCGCGCgcCGACg-- -3'
miRNA:   3'- gguaCUGCGU-GCCGCGCGa-GCUGaag -5'
31003 3' -55.9 NC_006560.1 + 128684 0.67 0.885544
Target:  5'- aCggGGCGgG-GGCGCGCUCGGagccgguCUUCa -3'
miRNA:   3'- gGuaCUGCgUgCCGCGCGAGCU-------GAAG- -5'
31003 3' -55.9 NC_006560.1 + 127829 0.73 0.551927
Target:  5'- cCCA-GACGCugGCGGCGCGCUuCGcCgcgUCa -3'
miRNA:   3'- -GGUaCUGCG--UGCCGCGCGA-GCuGa--AG- -5'
31003 3' -55.9 NC_006560.1 + 127681 0.71 0.683459
Target:  5'- ---cGACGCG-GGCGCGC-CGACgUCg -3'
miRNA:   3'- gguaCUGCGUgCCGCGCGaGCUGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.