miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 3' -55.9 NC_006560.1 + 14270 0.66 0.911781
Target:  5'- gCguUGGCGCcgGCGGCGuCGC-CGGCg-- -3'
miRNA:   3'- -GguACUGCG--UGCCGC-GCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 16252 0.66 0.905738
Target:  5'- -gGUGGCGUagcaaugcgagGCGGCGCGCgcggaGACg-- -3'
miRNA:   3'- ggUACUGCG-----------UGCCGCGCGag---CUGaag -5'
31003 3' -55.9 NC_006560.1 + 16806 0.67 0.872108
Target:  5'- gCCGUG-UGCACGGC-CGcCUCGAagaUCa -3'
miRNA:   3'- -GGUACuGCGUGCCGcGC-GAGCUga-AG- -5'
31003 3' -55.9 NC_006560.1 + 19407 0.71 0.653086
Target:  5'- gCcgGGCGagucgcCGCGGCgGCGCUCGGCUg- -3'
miRNA:   3'- gGuaCUGC------GUGCCG-CGCGAGCUGAag -5'
31003 3' -55.9 NC_006560.1 + 19578 0.67 0.864725
Target:  5'- aCCGggcGGCGcCGCGGCcCGCUCGuCgUCg -3'
miRNA:   3'- -GGUa--CUGC-GUGCCGcGCGAGCuGaAG- -5'
31003 3' -55.9 NC_006560.1 + 20969 0.66 0.911781
Target:  5'- ---cGGC-CGCGGCGcCGC-CGGCUUUa -3'
miRNA:   3'- gguaCUGcGUGCCGC-GCGaGCUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 21278 0.71 0.69351
Target:  5'- ---cGGCgGCGCGGCGCcCUCGACg-- -3'
miRNA:   3'- gguaCUG-CGUGCCGCGcGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 21611 0.67 0.879277
Target:  5'- gCCu--GCGCGCGGCGCcGC-CGGCcgCa -3'
miRNA:   3'- -GGuacUGCGUGCCGCG-CGaGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 21984 0.68 0.833185
Target:  5'- aCCAUGcCGCGCGcucCGCUCGGCggCg -3'
miRNA:   3'- -GGUACuGCGUGCcgcGCGAGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 22905 0.66 0.899464
Target:  5'- cCCGagGugGCGgaGGCGCGC-CGGCg-- -3'
miRNA:   3'- -GGUa-CugCGUg-CCGCGCGaGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 23180 0.69 0.780618
Target:  5'- gCCAUGGCcGC-CGG-GCGCUuCGGCUg- -3'
miRNA:   3'- -GGUACUG-CGuGCCgCGCGA-GCUGAag -5'
31003 3' -55.9 NC_006560.1 + 24587 0.73 0.561905
Target:  5'- ---cGGCGCugGGCGCGCagGGCg-- -3'
miRNA:   3'- gguaCUGCGugCCGCGCGagCUGaag -5'
31003 3' -55.9 NC_006560.1 + 25076 0.72 0.592105
Target:  5'- ---cGcCGC-CGGCGCGCcCGACUUCc -3'
miRNA:   3'- gguaCuGCGuGCCGCGCGaGCUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 26086 0.68 0.833185
Target:  5'- aCCcgGGCgGCcCGGCGCGgCgggGGCUUCg -3'
miRNA:   3'- -GGuaCUG-CGuGCCGCGC-Gag-CUGAAG- -5'
31003 3' -55.9 NC_006560.1 + 30565 0.66 0.911781
Target:  5'- ---cGGCGcCGCGGCGCGCgCG-CcUCg -3'
miRNA:   3'- gguaCUGC-GUGCCGCGCGaGCuGaAG- -5'
31003 3' -55.9 NC_006560.1 + 34648 0.68 0.849344
Target:  5'- aCCGggGACGCGCGGCG-GC-CGgGCgggUCg -3'
miRNA:   3'- -GGUa-CUGCGUGCCGCgCGaGC-UGa--AG- -5'
31003 3' -55.9 NC_006560.1 + 37520 0.66 0.911781
Target:  5'- --uUGGCGCGCcGCG-GCUCGGCcgCg -3'
miRNA:   3'- gguACUGCGUGcCGCgCGAGCUGaaG- -5'
31003 3' -55.9 NC_006560.1 + 42126 0.67 0.89296
Target:  5'- cCCcgGACGC-CaGCGC-CUCGGCgUCc -3'
miRNA:   3'- -GGuaCUGCGuGcCGCGcGAGCUGaAG- -5'
31003 3' -55.9 NC_006560.1 + 43293 0.66 0.899464
Target:  5'- gCCGgucucgcgGACGUcgGCGGCGaugcgcCGCUCGACg-- -3'
miRNA:   3'- -GGUa-------CUGCG--UGCCGC------GCGAGCUGaag -5'
31003 3' -55.9 NC_006560.1 + 43432 0.66 0.91759
Target:  5'- gCGUcGGCGCGCGGCaCGUgCGGCa-- -3'
miRNA:   3'- gGUA-CUGCGUGCCGcGCGaGCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.