miRNA display CGI


Results 61 - 80 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 99365 0.67 0.832557
Target:  5'- --uGGGCGuacugGGGCGGgGGCGCc- -3'
miRNA:   3'- uauUUCGCuuug-CCCGCCgCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 114345 0.67 0.832557
Target:  5'- -gGGGGCGc-GCGGcCGGgGGCGCGu -3'
miRNA:   3'- uaUUUCGCuuUGCCcGCCgCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 130214 0.67 0.832557
Target:  5'- ----cGCGAcgcgcGCGGggacGCGGUGGCGCGc -3'
miRNA:   3'- uauuuCGCUu----UGCC----CGCCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 18825 0.67 0.824117
Target:  5'- ----cGCGGGugcguCGGGCGGCucCGCGAg -3'
miRNA:   3'- uauuuCGCUUu----GCCCGCCGccGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 67876 0.67 0.824117
Target:  5'- -aGAGGaCGuc-CGGGUGGCGcCGCGAc -3'
miRNA:   3'- uaUUUC-GCuuuGCCCGCCGCcGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 100840 0.67 0.824117
Target:  5'- ---cGGCGGAGgGGaGgGGCGGUGuCGGg -3'
miRNA:   3'- uauuUCGCUUUgCC-CgCCGCCGC-GCU- -5'
31003 5' -56.6 NC_006560.1 + 65040 0.67 0.824117
Target:  5'- -cGGAGCGggGcCGGGCG-CGGgggcaggggcCGCGGg -3'
miRNA:   3'- uaUUUCGCuuU-GCCCGCcGCC----------GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 94791 0.67 0.824117
Target:  5'- ---cGGCG-AGCGccUGGCGGCGCGGa -3'
miRNA:   3'- uauuUCGCuUUGCccGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 115447 0.67 0.824117
Target:  5'- ----cGCGAGaucgugGCGcGGCuGGUGGCGCGc -3'
miRNA:   3'- uauuuCGCUU------UGC-CCG-CCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 119607 0.67 0.824117
Target:  5'- ---cGGCGggGCccgaGGGCcccgacGGCGGCGgGGc -3'
miRNA:   3'- uauuUCGCuuUG----CCCG------CCGCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 132900 0.67 0.824117
Target:  5'- -cGAAGgGcGACGuGCGGCGGC-CGAc -3'
miRNA:   3'- uaUUUCgCuUUGCcCGCCGCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 41701 0.67 0.823263
Target:  5'- -gGAAGCGccGCGGGUccgcgugGGCGGCcaCGAa -3'
miRNA:   3'- uaUUUCGCuuUGCCCG-------CCGCCGc-GCU- -5'
31003 5' -56.6 NC_006560.1 + 130098 0.67 0.815501
Target:  5'- --uGGGCGAgGACGGGCuGGCGuGgGcCGAg -3'
miRNA:   3'- uauUUCGCU-UUGCCCG-CCGC-CgC-GCU- -5'
31003 5' -56.6 NC_006560.1 + 21030 0.67 0.815501
Target:  5'- -aAGGGCGGGcCgGGGCGG-GGCGCc- -3'
miRNA:   3'- uaUUUCGCUUuG-CCCGCCgCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 81263 0.67 0.815501
Target:  5'- -cGGAGCGcGAgGGGCacacuGGCGGCccgGCGGc -3'
miRNA:   3'- uaUUUCGCuUUgCCCG-----CCGCCG---CGCU- -5'
31003 5' -56.6 NC_006560.1 + 122538 0.67 0.815501
Target:  5'- -gAGAGCGAcuGCGGGCcggguucucgcGGUGGCGacuGAg -3'
miRNA:   3'- uaUUUCGCUu-UGCCCG-----------CCGCCGCg--CU- -5'
31003 5' -56.6 NC_006560.1 + 126039 0.67 0.815501
Target:  5'- -cGAGGCGAccccgUGGGCGGgGGCGa-- -3'
miRNA:   3'- uaUUUCGCUuu---GCCCGCCgCCGCgcu -5'
31003 5' -56.6 NC_006560.1 + 148351 0.67 0.815501
Target:  5'- -aGGAGCGAccCGGGgcuccgaGGCcGCGCGAg -3'
miRNA:   3'- uaUUUCGCUuuGCCCg------CCGcCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 148451 0.67 0.815501
Target:  5'- --cGGGCGGgccGACggucgucugGGGCGGCGGaGCGGa -3'
miRNA:   3'- uauUUCGCU---UUG---------CCCGCCGCCgCGCU- -5'
31003 5' -56.6 NC_006560.1 + 33500 0.67 0.815501
Target:  5'- ---cAGgGAGGCGGGCGcCGGCcCGGg -3'
miRNA:   3'- uauuUCgCUUUGCCCGCcGCCGcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.