miRNA display CGI


Results 41 - 60 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 51473 0.66 0.84888
Target:  5'- ----cGCccgcGCGGGCGGCGGCccCGAg -3'
miRNA:   3'- uauuuCGcuu-UGCCCGCCGCCGc-GCU- -5'
31003 5' -56.6 NC_006560.1 + 82240 0.66 0.84888
Target:  5'- ---cGGCGugcGCGcacGGCGGCGGuCGCGu -3'
miRNA:   3'- uauuUCGCuu-UGC---CCGCCGCC-GCGCu -5'
31003 5' -56.6 NC_006560.1 + 118034 0.66 0.84888
Target:  5'- ---cGGCGggGCucGGCGGgGGCGgGc -3'
miRNA:   3'- uauuUCGCuuUGc-CCGCCgCCGCgCu -5'
31003 5' -56.6 NC_006560.1 + 118133 0.66 0.84888
Target:  5'- ---cGGCGccggGGGCGGacGCGGCGGacCGCGAg -3'
miRNA:   3'- uauuUCGC----UUUGCC--CGCCGCC--GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 2949 0.66 0.84888
Target:  5'- --cGAGCuccucgcCGGGCaGCGGCGCGu -3'
miRNA:   3'- uauUUCGcuuu---GCCCGcCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 57356 0.66 0.84888
Target:  5'- -cGAAGCGGccuCGGGCGGaggaGGCccCGAg -3'
miRNA:   3'- uaUUUCGCUuu-GCCCGCCg---CCGc-GCU- -5'
31003 5' -56.6 NC_006560.1 + 34550 0.66 0.84888
Target:  5'- uGUGuguGCGggG-GGGCGGCcggggguGCGCGAc -3'
miRNA:   3'- -UAUuu-CGCuuUgCCCGCCGc------CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 148398 0.66 0.848082
Target:  5'- -gGGAGCGggGacgcggggcgcucCGGGCGGgcCGGCGagGAg -3'
miRNA:   3'- uaUUUCGCuuU-------------GCCCGCC--GCCGCg-CU- -5'
31003 5' -56.6 NC_006560.1 + 148495 0.67 0.840814
Target:  5'- ----cGCGGAggccucccgGCGGGaCGGCGGUccgacgGCGAc -3'
miRNA:   3'- uauuuCGCUU---------UGCCC-GCCGCCG------CGCU- -5'
31003 5' -56.6 NC_006560.1 + 41279 0.67 0.840814
Target:  5'- -cAGGGCcaGGAAcgucCGGGCGGUcGCGCGGc -3'
miRNA:   3'- uaUUUCG--CUUU----GCCCGCCGcCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 146978 0.67 0.840814
Target:  5'- --uGGGCGGgugGGCGGGgcaUGGCGGCucGCGGc -3'
miRNA:   3'- uauUUCGCU---UUGCCC---GCCGCCG--CGCU- -5'
31003 5' -56.6 NC_006560.1 + 33457 0.67 0.840814
Target:  5'- --cGGGCGGGccCGGGCaggaggagaGGCGGCGgGGg -3'
miRNA:   3'- uauUUCGCUUu-GCCCG---------CCGCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 84700 0.67 0.840814
Target:  5'- ----cGCGGgcGACGGGCGccuCGGCGCc- -3'
miRNA:   3'- uauuuCGCU--UUGCCCGCc--GCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 2218 0.67 0.840814
Target:  5'- ---cAGCGccagguAGACGGGCcgcaGCGGCGCa- -3'
miRNA:   3'- uauuUCGC------UUUGCCCGc---CGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 56859 0.67 0.840814
Target:  5'- -aGAGGCcccGGAC-GGCGGCGGuCGCGu -3'
miRNA:   3'- uaUUUCGc--UUUGcCCGCCGCC-GCGCu -5'
31003 5' -56.6 NC_006560.1 + 114345 0.67 0.832557
Target:  5'- -gGGGGCGc-GCGGcCGGgGGCGCGu -3'
miRNA:   3'- uaUUUCGCuuUGCCcGCCgCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 99365 0.67 0.832557
Target:  5'- --uGGGCGuacugGGGCGGgGGCGCc- -3'
miRNA:   3'- uauUUCGCuuug-CCCGCCgCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 51729 0.67 0.832557
Target:  5'- --uGGGcCGAcgcGCGGGCGGCcucgcGGCGCa- -3'
miRNA:   3'- uauUUC-GCUu--UGCCCGCCG-----CCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 33187 0.67 0.832557
Target:  5'- -gGAAGgGGcccGCGGGgaaGGCGGcCGCGGg -3'
miRNA:   3'- uaUUUCgCUu--UGCCCg--CCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 33056 0.67 0.832557
Target:  5'- -gAAGGCGggGaaGGCGGCcgaggggaaGGCGgGGa -3'
miRNA:   3'- uaUUUCGCuuUgcCCGCCG---------CCGCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.