miRNA display CGI


Results 21 - 40 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 102407 0.66 0.871866
Target:  5'- ---cGGCGGccuCGGGC-GCGGcCGCGGc -3'
miRNA:   3'- uauuUCGCUuu-GCCCGcCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3960 0.66 0.864412
Target:  5'- -gAGGGCGGccgcCaGGCGGCGcuGCGCGGc -3'
miRNA:   3'- uaUUUCGCUuu--GcCCGCCGC--CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 34597 0.66 0.864412
Target:  5'- -cGGGGgGggGCuccgggGGGUGGCcGCGCGGc -3'
miRNA:   3'- uaUUUCgCuuUG------CCCGCCGcCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 35543 0.66 0.864412
Target:  5'- ----cGCGggGCGGGggggcCGGCaauuaGCGCGGa -3'
miRNA:   3'- uauuuCGCuuUGCCC-----GCCGc----CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 28177 0.66 0.864412
Target:  5'- cUGGGGUGAGucggugguccCGGGcCGGCGGCccggGCGGg -3'
miRNA:   3'- uAUUUCGCUUu---------GCCC-GCCGCCG----CGCU- -5'
31003 5' -56.6 NC_006560.1 + 32401 0.66 0.864412
Target:  5'- -gGGGGCGGA--GGGUGGgGGC-CGAg -3'
miRNA:   3'- uaUUUCGCUUugCCCGCCgCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 97369 0.66 0.864412
Target:  5'- ----cGCGAgcaGACGcGGCGGCcGGCcggggGCGAc -3'
miRNA:   3'- uauuuCGCU---UUGC-CCGCCG-CCG-----CGCU- -5'
31003 5' -56.6 NC_006560.1 + 100484 0.66 0.864412
Target:  5'- ----cGCGGGACagcgggGGGCcGCGGCGCu- -3'
miRNA:   3'- uauuuCGCUUUG------CCCGcCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 103040 0.66 0.864412
Target:  5'- ----cGCGGGgcGCGGGCGGCcGCuCGGg -3'
miRNA:   3'- uauuuCGCUU--UGCCCGCCGcCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 114856 0.66 0.856748
Target:  5'- ---uAGCGggGagGGGCGGagacGCGCGGg -3'
miRNA:   3'- uauuUCGCuuUg-CCCGCCgc--CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 13066 0.66 0.856748
Target:  5'- -gGAAGCGuguAGCGGcaGgGGCccuuGGCGCGGu -3'
miRNA:   3'- uaUUUCGCu--UUGCC--CgCCG----CCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 54653 0.66 0.856748
Target:  5'- ----cGCGGGAUGagggucGCGGgGGCGCGGc -3'
miRNA:   3'- uauuuCGCUUUGCc-----CGCCgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 75231 0.66 0.856748
Target:  5'- -cGAGGCGcgcGCGGGCcuGGCcGcGUGCGAg -3'
miRNA:   3'- uaUUUCGCuu-UGCCCG--CCG-C-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 77866 0.66 0.856748
Target:  5'- ----uGgGAGACGGG-GGcCGGgGCGAu -3'
miRNA:   3'- uauuuCgCUUUGCCCgCC-GCCgCGCU- -5'
31003 5' -56.6 NC_006560.1 + 128663 0.66 0.856748
Target:  5'- -gGGAGCuGcucguguauauGGACGGgGCGGgGGCGCGc -3'
miRNA:   3'- uaUUUCG-C-----------UUUGCC-CGCCgCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 132215 0.66 0.856748
Target:  5'- -cGAGGCGGA---GGCGGUGuuGCGCGGg -3'
miRNA:   3'- uaUUUCGCUUugcCCGCCGC--CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 143329 0.66 0.856748
Target:  5'- ---cGGCGAcccCGaGGCGGCGgGCGCc- -3'
miRNA:   3'- uauuUCGCUuu-GC-CCGCCGC-CGCGcu -5'
31003 5' -56.6 NC_006560.1 + 87155 0.66 0.856748
Target:  5'- ----cGCGcugcGCGGGCccGGCGGCGUa- -3'
miRNA:   3'- uauuuCGCuu--UGCCCG--CCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 148624 0.66 0.855971
Target:  5'- -gGGGGCGGuccccGACGGGCGGgccccgcCGGC-CGGa -3'
miRNA:   3'- uaUUUCGCU-----UUGCCCGCC-------GCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 2949 0.66 0.84888
Target:  5'- --cGAGCuccucgcCGGGCaGCGGCGCGu -3'
miRNA:   3'- uauUUCGcuuu---GCCCGcCGCCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.