miRNA display CGI


Results 21 - 40 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 3247 0.73 0.509153
Target:  5'- --uGGGCGGGccCGGGCGGCG-CGCGGc -3'
miRNA:   3'- uauUUCGCUUu-GCCCGCCGCcGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3314 0.77 0.291418
Target:  5'- --uGAGCGccGCGGGcCGGgGGCGCGGg -3'
miRNA:   3'- uauUUCGCuuUGCCC-GCCgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3374 0.75 0.40758
Target:  5'- ---cGGCG-GGCGGGCgGGCGGgCGCGGg -3'
miRNA:   3'- uauuUCGCuUUGCCCG-CCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3417 0.81 0.165835
Target:  5'- ---cGGCG-GGCGGGCGGCGGgCGCGGg -3'
miRNA:   3'- uauuUCGCuUUGCCCGCCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3448 0.71 0.606557
Target:  5'- -gGGGGCGAGgagcucuugcgcuuGCGGGCcgcgcgGGCGGCGuCGGc -3'
miRNA:   3'- uaUUUCGCUU--------------UGCCCG------CCGCCGC-GCU- -5'
31003 5' -56.6 NC_006560.1 + 3541 0.69 0.701563
Target:  5'- -aAGAGCaGGucGGC-GGCGGCGGCGCcGAc -3'
miRNA:   3'- uaUUUCG-CU--UUGcCCGCCGCCGCG-CU- -5'
31003 5' -56.6 NC_006560.1 + 3590 0.72 0.55876
Target:  5'- ----uGCGGgccagcAGCGGcGCGGCGGCGCc- -3'
miRNA:   3'- uauuuCGCU------UUGCC-CGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 3739 0.74 0.416291
Target:  5'- --cAGGCGc-GCGGGC-GCGGCGCGGg -3'
miRNA:   3'- uauUUCGCuuUGCCCGcCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3773 0.69 0.711601
Target:  5'- ----cGCGcgGCGGgaccGCGGCGcGCGCGGc -3'
miRNA:   3'- uauuuCGCuuUGCC----CGCCGC-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3887 0.68 0.788682
Target:  5'- ---cGGCGGcgucGGCGGcGuCGGCGGCGuCGGc -3'
miRNA:   3'- uauuUCGCU----UUGCC-C-GCCGCCGC-GCU- -5'
31003 5' -56.6 NC_006560.1 + 3960 0.66 0.864412
Target:  5'- -gAGGGCGGccgcCaGGCGGCGcuGCGCGGc -3'
miRNA:   3'- uaUUUCGCUuu--GcCCGCCGC--CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 4022 0.79 0.235081
Target:  5'- -gGGGGCGGcggcGGCgucccgGGGCGGCGGCGCGGc -3'
miRNA:   3'- uaUUUCGCU----UUG------CCCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 4149 0.7 0.660911
Target:  5'- ---cGGCGGcucauggccacGGC-GGCGGCGGCGUGGg -3'
miRNA:   3'- uauuUCGCU-----------UUGcCCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 4699 0.72 0.548713
Target:  5'- ---cGGCGgcGCGcGcGCGGCGGCGCu- -3'
miRNA:   3'- uauuUCGCuuUGC-C-CGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 4753 0.77 0.319663
Target:  5'- ---cGGCGGcccGCGgcGGCGGCGGCGCGGg -3'
miRNA:   3'- uauuUCGCUu--UGC--CCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 4861 0.71 0.579
Target:  5'- ---cGGCGAgguucgcgucGACGgcGGCGGCGGCGCc- -3'
miRNA:   3'- uauuUCGCU----------UUGC--CCGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 5090 0.67 0.832557
Target:  5'- ----uGCGgcGCGccgcccggggucGGCGGgGGCGCGGc -3'
miRNA:   3'- uauuuCGCuuUGC------------CCGCCgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 5164 0.71 0.619883
Target:  5'- -cGGGGCcgcgGggGCGGGCcGCGGCGaCGGc -3'
miRNA:   3'- uaUUUCG----CuuUGCCCGcCGCCGC-GCU- -5'
31003 5' -56.6 NC_006560.1 + 5261 0.78 0.265164
Target:  5'- ----cGCGAgGACGcGGCGGCGGCgGCGAg -3'
miRNA:   3'- uauuuCGCU-UUGC-CCGCCGCCG-CGCU- -5'
31003 5' -56.6 NC_006560.1 + 5493 0.71 0.619883
Target:  5'- ---cGGCGAGGgucGGCGGCGGuCGCGGc -3'
miRNA:   3'- uauuUCGCUUUgc-CCGCCGCC-GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.