miRNA display CGI


Results 1 - 20 of 360 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 18 0.74 0.416291
Target:  5'- ---cGGCGggGCGGuuCGGCGGCGgGGg -3'
miRNA:   3'- uauuUCGCuuUGCCc-GCCGCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 518 0.69 0.711601
Target:  5'- --cGGGCGccGGgGGGCGGCGGC-CGGc -3'
miRNA:   3'- uauUUCGCu-UUgCCCGCCGCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 1080 0.66 0.879103
Target:  5'- -cGGGGCaGAAGCcgcccgccaGGCuccccGGCGGCGCGAg -3'
miRNA:   3'- uaUUUCG-CUUUGc--------CCG-----CCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 1881 0.83 0.131559
Target:  5'- --cGGGCGGGggucGCGGGCGGCGGCGCc- -3'
miRNA:   3'- uauUUCGCUU----UGCCCGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 1988 0.68 0.779448
Target:  5'- -cGGGGCcGGGCcagcuccaGGGCGGCGGCGUc- -3'
miRNA:   3'- uaUUUCGcUUUG--------CCCGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 2060 0.71 0.60963
Target:  5'- ---cAGCGcacgcGCGGcGCGGCGGCGgGGu -3'
miRNA:   3'- uauuUCGCuu---UGCC-CGCCGCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 2170 0.69 0.688426
Target:  5'- ---cAGCGcgGCGGGCagggccucgggcccGGCGcGCGCGGc -3'
miRNA:   3'- uauuUCGCuuUGCCCG--------------CCGC-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 2218 0.67 0.840814
Target:  5'- ---cAGCGccagguAGACGGGCcgcaGCGGCGCa- -3'
miRNA:   3'- uauuUCGC------UUUGCCCGc---CGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 2294 0.68 0.788682
Target:  5'- ---cGGCGGAAguCGGGCGcGCcGGCgGCGGc -3'
miRNA:   3'- uauuUCGCUUU--GCCCGC-CG-CCG-CGCU- -5'
31003 5' -56.6 NC_006560.1 + 2328 0.72 0.528796
Target:  5'- ----cGCGc-GCGGGCgagucGGCGGCGCGGc -3'
miRNA:   3'- uauuuCGCuuUGCCCG-----CCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 2373 0.69 0.7106
Target:  5'- ---cGGCGcgGCGGuacucgcGCGGCGGCaGCGGc -3'
miRNA:   3'- uauuUCGCuuUGCC-------CGCCGCCG-CGCU- -5'
31003 5' -56.6 NC_006560.1 + 2457 0.77 0.298291
Target:  5'- ----cGCGGcccaGGCGcGGCGGCGGCGCGu -3'
miRNA:   3'- uauuuCGCU----UUGC-CCGCCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 2548 0.75 0.398983
Target:  5'- -gGAGGCGAGcACGGcGCGGCGcaggucgcGCGCGGc -3'
miRNA:   3'- uaUUUCGCUU-UGCC-CGCCGC--------CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 2624 0.69 0.731465
Target:  5'- -cAGGGCaGGuaGACGuGGCGGCG-CGCGAc -3'
miRNA:   3'- uaUUUCG-CU--UUGC-CCGCCGCcGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 2679 0.71 0.623988
Target:  5'- --cGGGCGGcacggcguccacgacGACGaGGCGGCGGCcgGCGGc -3'
miRNA:   3'- uauUUCGCU---------------UUGC-CCGCCGCCG--CGCU- -5'
31003 5' -56.6 NC_006560.1 + 2913 0.71 0.619883
Target:  5'- ---cGGCGGuccaGGCGGGCGG-GGCGgGGg -3'
miRNA:   3'- uauuUCGCU----UUGCCCGCCgCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 2949 0.66 0.84888
Target:  5'- --cGAGCuccucgcCGGGCaGCGGCGCGu -3'
miRNA:   3'- uauUUCGcuuu---GCCCGcCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 3013 0.72 0.518938
Target:  5'- ---uGGCGcAucCaGGCGGCGGCGCGGc -3'
miRNA:   3'- uauuUCGC-UuuGcCCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3039 0.68 0.779448
Target:  5'- ---cAGCGGGcccgaggcGCGGaGCGGCccgagGGCGCGGc -3'
miRNA:   3'- uauuUCGCUU--------UGCC-CGCCG-----CCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3219 0.85 0.091028
Target:  5'- -gAGGGCGGcggcGGCGGGCGGCGGCGUGu -3'
miRNA:   3'- uaUUUCGCU----UUGCCCGCCGCCGCGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.