miRNA display CGI


Results 1 - 20 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 150347 0.74 0.416291
Target:  5'- ---cGGCGggGCGGuuCGGCGGCGgGGg -3'
miRNA:   3'- uauuUCGCuuUGCCc-GCCGCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 150201 0.69 0.711601
Target:  5'- -gAGAGUGA---GGGUGGCGaGCGCGc -3'
miRNA:   3'- uaUUUCGCUuugCCCGCCGC-CGCGCu -5'
31003 5' -56.6 NC_006560.1 + 150092 0.71 0.579
Target:  5'- ----cGCGAGcuCGGGCaGCaGGCGCGAg -3'
miRNA:   3'- uauuuCGCUUu-GCCCGcCG-CCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 149472 0.68 0.77008
Target:  5'- --cAGGCGGcaGACGGcCGGCGGCcCGGg -3'
miRNA:   3'- uauUUCGCU--UUGCCcGCCGCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 149209 0.68 0.77008
Target:  5'- ---cGGCGAGGgGGcGCGGCccGGgGCGGa -3'
miRNA:   3'- uauuUCGCUUUgCC-CGCCG--CCgCGCU- -5'
31003 5' -56.6 NC_006560.1 + 149152 0.72 0.568857
Target:  5'- ----cGCGggGCGGcccccaGgGGCGGCGCGc -3'
miRNA:   3'- uauuuCGCuuUGCC------CgCCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 148958 0.76 0.334537
Target:  5'- -cGGGGCGGGAC--GCGGUGGCGCGAc -3'
miRNA:   3'- uaUUUCGCUUUGccCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 148754 0.69 0.728506
Target:  5'- uUGGGGCGGccccGACGGGCgccauguuggagggGGCGG-GCGGg -3'
miRNA:   3'- uAUUUCGCU----UUGCCCG--------------CCGCCgCGCU- -5'
31003 5' -56.6 NC_006560.1 + 148624 0.66 0.855971
Target:  5'- -gGGGGCGGuccccGACGGGCGGgccccgcCGGC-CGGa -3'
miRNA:   3'- uaUUUCGCU-----UUGCCCGCC-------GCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 148495 0.67 0.840814
Target:  5'- ----cGCGGAggccucccgGCGGGaCGGCGGUccgacgGCGAc -3'
miRNA:   3'- uauuuCGCUU---------UGCCC-GCCGCCG------CGCU- -5'
31003 5' -56.6 NC_006560.1 + 148451 0.67 0.815501
Target:  5'- --cGGGCGGgccGACggucgucugGGGCGGCGGaGCGGa -3'
miRNA:   3'- uauUUCGCU---UUG---------CCCGCCGCCgCGCU- -5'
31003 5' -56.6 NC_006560.1 + 148398 0.66 0.848082
Target:  5'- -gGGAGCGggGacgcggggcgcucCGGGCGGgcCGGCGagGAg -3'
miRNA:   3'- uaUUUCGCuuU-------------GCCCGCC--GCCGCg-CU- -5'
31003 5' -56.6 NC_006560.1 + 148351 0.67 0.815501
Target:  5'- -aGGAGCGAccCGGGgcuccgaGGCcGCGCGAg -3'
miRNA:   3'- uaUUUCGCUuuGCCCg------CCGcCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 147910 0.68 0.769136
Target:  5'- ----cGCGggGCGGG-GGCGGgggagagggggccCGCGGc -3'
miRNA:   3'- uauuuCGCuuUGCCCgCCGCC-------------GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 147835 0.69 0.690453
Target:  5'- -aGAAGCGguGCaGGCaggggaaGGCGGCGCa- -3'
miRNA:   3'- uaUUUCGCuuUGcCCG-------CCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 147566 0.68 0.788682
Target:  5'- --cGGGCGggGagaGGGCGcGCacGGUGCGGc -3'
miRNA:   3'- uauUUCGCuuUg--CCCGC-CG--CCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 147384 0.68 0.788682
Target:  5'- ----uGCGggGgGGGCGGagggGaGCGCGGg -3'
miRNA:   3'- uauuuCGCuuUgCCCGCCg---C-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 147118 0.81 0.165835
Target:  5'- ----cGCGAcGCGGGCcGCGGCGCGAg -3'
miRNA:   3'- uauuuCGCUuUGCCCGcCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 147093 0.7 0.660911
Target:  5'- --uGGGCGAGucgGCGGGgGGCGG-GCGn -3'
miRNA:   3'- uauUUCGCUU---UGCCCgCCGCCgCGCu -5'
31003 5' -56.6 NC_006560.1 + 147059 0.77 0.284669
Target:  5'- -cGGGGgGAGGCGGGCGGCGaGUcgGCGAu -3'
miRNA:   3'- uaUUUCgCUUUGCCCGCCGC-CG--CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.