miRNA display CGI


Results 1 - 20 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 130038 1.06 0.00354
Target:  5'- uAUAAAGCGAAACGGGCGGCGGCGCGAc -3'
miRNA:   3'- -UAUUUCGCUUUGCCCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3219 0.85 0.091028
Target:  5'- -gAGGGCGGcggcGGCGGGCGGCGGCGUGu -3'
miRNA:   3'- uaUUUCGCU----UUGCCCGCCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 1881 0.83 0.131559
Target:  5'- --cGGGCGGGggucGCGGGCGGCGGCGCc- -3'
miRNA:   3'- uauUUCGCUU----UGCCCGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 146468 0.82 0.145904
Target:  5'- -aGGAGCGGggGGCGGaGCGGCGGcCGCGAg -3'
miRNA:   3'- uaUUUCGCU--UUGCC-CGCCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 31950 0.82 0.145904
Target:  5'- -gGGGGCGGc-CGGGCGGgGGCGCGAg -3'
miRNA:   3'- uaUUUCGCUuuGCCCGCCgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 147118 0.81 0.165835
Target:  5'- ----cGCGAcGCGGGCcGCGGCGCGAg -3'
miRNA:   3'- uauuuCGCUuUGCCCGcCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 3417 0.81 0.165835
Target:  5'- ---cGGCG-GGCGGGCGGCGGgCGCGGg -3'
miRNA:   3'- uauuUCGCuUUGCCCGCCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 16369 0.81 0.165835
Target:  5'- -cGGAGCGAGGgGGGgcaUGGCGGCGCGGg -3'
miRNA:   3'- uaUUUCGCUUUgCCC---GCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 113976 0.81 0.170104
Target:  5'- -----aCGAGACGGGCGGgGGCGUGAa -3'
miRNA:   3'- uauuucGCUUUGCCCGCCgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 98424 0.81 0.170104
Target:  5'- -aAGAGCGAcggcgcgccgcuGGCGGGCGGCGGCGagGAc -3'
miRNA:   3'- uaUUUCGCU------------UUGCCCGCCGCCGCg-CU- -5'
31003 5' -56.6 NC_006560.1 + 83342 0.81 0.178937
Target:  5'- -gGGGGCGAGgagggcGCGGGCGGCGGCcCGGg -3'
miRNA:   3'- uaUUUCGCUU------UGCCCGCCGCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 54383 0.8 0.188176
Target:  5'- -cGGGGgGAAacgcGCGGGCGGgGGCGCGGg -3'
miRNA:   3'- uaUUUCgCUU----UGCCCGCCgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 14371 0.8 0.202819
Target:  5'- gGUGGGGCGAGGCGaGGCGG-GGCGaCGAc -3'
miRNA:   3'- -UAUUUCGCUUUGC-CCGCCgCCGC-GCU- -5'
31003 5' -56.6 NC_006560.1 + 26078 0.8 0.213123
Target:  5'- --cGGGCGGAAccCGGGCGGCccGGCGCGGc -3'
miRNA:   3'- uauUUCGCUUU--GCCCGCCG--CCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 81184 0.8 0.213123
Target:  5'- ---cGGCGGAcauggcGCGGGUGGgGGCGCGAc -3'
miRNA:   3'- uauuUCGCUU------UGCCCGCCgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 102927 0.79 0.218442
Target:  5'- ----cGCGGggGACcgGGGCGGCGGCGCGGu -3'
miRNA:   3'- uauuuCGCU--UUG--CCCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 4022 0.79 0.235081
Target:  5'- -gGGGGCGGcggcGGCgucccgGGGCGGCGGCGCGGc -3'
miRNA:   3'- uaUUUCGCU----UUG------CCCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 142076 0.78 0.252771
Target:  5'- -cGAGGCcGGGCGGGCGgggccGCGGCGCGGa -3'
miRNA:   3'- uaUUUCGcUUUGCCCGC-----CGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 11143 0.78 0.258907
Target:  5'- -gAGGGCcccGggGCGGcGCGGCGaGCGCGAg -3'
miRNA:   3'- uaUUUCG---CuuUGCC-CGCCGC-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 9075 0.78 0.258907
Target:  5'- ---cAGgGGGAgGGGCGGCGGgGCGAc -3'
miRNA:   3'- uauuUCgCUUUgCCCGCCGCCgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.