miRNA display CGI


Results 21 - 40 of 360 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 9075 0.78 0.258907
Target:  5'- ---cAGgGGGAgGGGCGGCGGgGCGAc -3'
miRNA:   3'- uauuUCgCUUUgCCCGCCGCCgCGCU- -5'
31003 5' -56.6 NC_006560.1 + 5261 0.78 0.265164
Target:  5'- ----cGCGAgGACGcGGCGGCGGCgGCGAg -3'
miRNA:   3'- uauuuCGCU-UUGC-CCGCCGCCG-CGCU- -5'
31003 5' -56.6 NC_006560.1 + 20922 0.78 0.271542
Target:  5'- -cGGAGCGAGgaggGCcGGCGGCGGCgGCGAc -3'
miRNA:   3'- uaUUUCGCUU----UGcCCGCCGCCG-CGCU- -5'
31003 5' -56.6 NC_006560.1 + 147059 0.77 0.284669
Target:  5'- -cGGGGgGAGGCGGGCGGCGaGUcgGCGAu -3'
miRNA:   3'- uaUUUCgCUUUGCCCGCCGC-CG--CGCU- -5'
31003 5' -56.6 NC_006560.1 + 12012 0.77 0.291418
Target:  5'- -cAGGGCGAaggcGACGGcGUGGCGGCGgGGg -3'
miRNA:   3'- uaUUUCGCU----UUGCC-CGCCGCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 3314 0.77 0.291418
Target:  5'- --uGAGCGccGCGGGcCGGgGGCGCGGg -3'
miRNA:   3'- uauUUCGCuuUGCCC-GCCgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 34400 0.77 0.291418
Target:  5'- -gGGGGgGGGugGGGCGGCGGC-CGGu -3'
miRNA:   3'- uaUUUCgCUUugCCCGCCGCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 2457 0.77 0.298291
Target:  5'- ----cGCGGcccaGGCGcGGCGGCGGCGCGu -3'
miRNA:   3'- uauuuCGCU----UUGC-CCGCCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 39941 0.77 0.298291
Target:  5'- cUGGGGCccgucgguAGGCgGGGCGGCGGCGCGGg -3'
miRNA:   3'- uAUUUCGc-------UUUG-CCCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 105023 0.77 0.30529
Target:  5'- ----cGCGGAACGGGCGcuccGCGGCGCc- -3'
miRNA:   3'- uauuuCGCUUUGCCCGC----CGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 4753 0.77 0.319663
Target:  5'- ---cGGCGGcccGCGgcGGCGGCGGCGCGGg -3'
miRNA:   3'- uauuUCGCUu--UGC--CCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 102861 0.76 0.327037
Target:  5'- ---uGGCGAGcCGGGCGcGCGGCGgGGu -3'
miRNA:   3'- uauuUCGCUUuGCCCGC-CGCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 16242 0.76 0.330022
Target:  5'- -cGAGGCGGGggguggcguagcaauGCGaGGCGGCGcGCGCGGa -3'
miRNA:   3'- uaUUUCGCUU---------------UGC-CCGCCGC-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 130294 0.76 0.330022
Target:  5'- ---cGGCGAGaucucggccgccggcGCGguGGCGGCGGCGCGGg -3'
miRNA:   3'- uauuUCGCUU---------------UGC--CCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 103117 0.76 0.334537
Target:  5'- ---cGGCGGAcGCGGG-GGCGGCGCGc -3'
miRNA:   3'- uauuUCGCUU-UGCCCgCCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 148958 0.76 0.334537
Target:  5'- -cGGGGCGGGAC--GCGGUGGCGCGAc -3'
miRNA:   3'- uaUUUCGCUUUGccCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 19569 0.76 0.349912
Target:  5'- -gGAGGCGGcacCGGGCGGCGcCGCGGc -3'
miRNA:   3'- uaUUUCGCUuu-GCCCGCCGCcGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 102189 0.76 0.357785
Target:  5'- gGUGAGGgGGAAgucGGCGGCGGUGCGGu -3'
miRNA:   3'- -UAUUUCgCUUUgc-CCGCCGCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 76850 0.76 0.357785
Target:  5'- -aAGAGCGccGAGCGGGCGGgGGcCGuCGAg -3'
miRNA:   3'- uaUUUCGC--UUUGCCCGCCgCC-GC-GCU- -5'
31003 5' -56.6 NC_006560.1 + 85584 0.76 0.357785
Target:  5'- -gGGGGCGcgGCGGGC-GCGGCGuCGAg -3'
miRNA:   3'- uaUUUCGCuuUGCCCGcCGCCGC-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.