miRNA display CGI


Results 41 - 60 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 5516 0.66 0.879103
Target:  5'- ----nGCGAGGgucGGCGGCGGuCGCGc -3'
miRNA:   3'- uauuuCGCUUUgc-CCGCCGCC-GCGCu -5'
31003 5' -56.6 NC_006560.1 + 5672 0.71 0.599393
Target:  5'- -cGGGGCGcggGGGCGGcCGGCGGCGCc- -3'
miRNA:   3'- uaUUUCGC---UUUGCCcGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 7920 0.67 0.806718
Target:  5'- ---uGGCGGAcgGCGGccgugaacuucGUGGCGGCGCu- -3'
miRNA:   3'- uauuUCGCUU--UGCC-----------CGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 8669 0.68 0.750983
Target:  5'- ----cGCGuucGCcGGCGGCGGCGCc- -3'
miRNA:   3'- uauuuCGCuu-UGcCCGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 8877 0.72 0.568857
Target:  5'- gGUGGGG-GAGGCGGGgGGCuucGCGCGGg -3'
miRNA:   3'- -UAUUUCgCUUUGCCCgCCGc--CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 9075 0.78 0.258907
Target:  5'- ---cAGgGGGAgGGGCGGCGGgGCGAc -3'
miRNA:   3'- uauuUCgCUUUgCCCGCCGCCgCGCU- -5'
31003 5' -56.6 NC_006560.1 + 9098 0.75 0.390504
Target:  5'- ---cGGCGGAGCGcGCGcGCGGCGCGc -3'
miRNA:   3'- uauuUCGCUUUGCcCGC-CGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 9591 0.72 0.538723
Target:  5'- -cGAGGCGcggcGAGCGGaGCGcGgGGCGCGGc -3'
miRNA:   3'- uaUUUCGC----UUUGCC-CGC-CgCCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 9871 0.68 0.760589
Target:  5'- cGUGGGGCaccGGGgGGGCGGCacgcuGCGCGAg -3'
miRNA:   3'- -UAUUUCGc--UUUgCCCGCCGc----CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 9958 0.71 0.579
Target:  5'- -cGGGGCGucGGCGGGCGaGCGGCcucgggcagccGCGGg -3'
miRNA:   3'- uaUUUCGCu-UUGCCCGC-CGCCG-----------CGCU- -5'
31003 5' -56.6 NC_006560.1 + 10223 0.75 0.398983
Target:  5'- gGUAGGGguaGGggUGGGCGGCgggGGCGCGGg -3'
miRNA:   3'- -UAUUUCg--CUuuGCCCGCCG---CCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 11102 0.69 0.711601
Target:  5'- -gGGGGCGGAGgaGGGCGGgGGgGgGGg -3'
miRNA:   3'- uaUUUCGCUUUg-CCCGCCgCCgCgCU- -5'
31003 5' -56.6 NC_006560.1 + 11143 0.78 0.258907
Target:  5'- -gAGGGCcccGggGCGGcGCGGCGaGCGCGAg -3'
miRNA:   3'- uaUUUCG---CuuUGCC-CGCCGC-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 11335 0.68 0.779448
Target:  5'- -cGGGGCGAccggcGAgGGGgGGCGGUagauGCGGg -3'
miRNA:   3'- uaUUUCGCU-----UUgCCCgCCGCCG----CGCU- -5'
31003 5' -56.6 NC_006560.1 + 11682 0.68 0.797775
Target:  5'- ---cGGCGGuccgGGCGGGCGGgauCGGCGUc- -3'
miRNA:   3'- uauuUCGCU----UUGCCCGCC---GCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 12012 0.77 0.291418
Target:  5'- -cAGGGCGAaggcGACGGcGUGGCGGCGgGGg -3'
miRNA:   3'- uaUUUCGCU----UUGCC-CGCCGCCGCgCU- -5'
31003 5' -56.6 NC_006560.1 + 13066 0.66 0.856748
Target:  5'- -gGAAGCGuguAGCGGcaGgGGCccuuGGCGCGGu -3'
miRNA:   3'- uaUUUCGCu--UUGCC--CgCCG----CCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 14061 0.72 0.548713
Target:  5'- ----cGCugGAGACGuucuGGCGGCGGCGCGc -3'
miRNA:   3'- uauuuCG--CUUUGC----CCGCCGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 14206 0.71 0.60963
Target:  5'- cGUGGGGUGGu-CGGGCGG-GGCGCc- -3'
miRNA:   3'- -UAUUUCGCUuuGCCCGCCgCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 14371 0.8 0.202819
Target:  5'- gGUGGGGCGAGGCGaGGCGG-GGCGaCGAc -3'
miRNA:   3'- -UAUUUCGCUUUGC-CCGCCgCCGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.