miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 81375 0.67 0.728484
Target:  5'- aGCGCGGGcggaacGG-CCCGCU--GCugCCg -3'
miRNA:   3'- -CGCGUCCau----CCaGGGCGAguCGugGG- -5'
31005 3' -59.1 NC_006560.1 + 15872 0.67 0.728484
Target:  5'- cGCgGCGGcGUGGGggCCgGCgacCGGCGCCa -3'
miRNA:   3'- -CG-CGUC-CAUCCa-GGgCGa--GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 55499 0.67 0.728484
Target:  5'- cCGCGGGcgcgGGGUCggCGCcCAGCAgCCa -3'
miRNA:   3'- cGCGUCCa---UCCAGg-GCGaGUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 89339 0.67 0.726558
Target:  5'- cGCGCGGGUucccucggAGGUCCUugggauucccCGGCGCCUc -3'
miRNA:   3'- -CGCGUCCA--------UCCAGGGcga-------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 81852 0.67 0.718822
Target:  5'- cGCGCAGGUacGGGUugcaggggacgUCCGCcCAGuCGCgCa -3'
miRNA:   3'- -CGCGUCCA--UCCA-----------GGGCGaGUC-GUGgG- -5'
31005 3' -59.1 NC_006560.1 + 88971 0.67 0.718822
Target:  5'- gGCGgAGGaucGG-CCgGCUCccccGGCGCCCg -3'
miRNA:   3'- -CGCgUCCau-CCaGGgCGAG----UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 117317 0.67 0.718822
Target:  5'- gGCGCggaGGGUgagcggucGGG-CCCGC-C-GCGCCCg -3'
miRNA:   3'- -CGCG---UCCA--------UCCaGGGCGaGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 137452 0.67 0.718822
Target:  5'- gGCGUucGaAGGggCgCCGUUCAGCACCUa -3'
miRNA:   3'- -CGCGucCaUCCa-G-GGCGAGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 11979 0.67 0.709089
Target:  5'- -gGCGGGgcucUGGGUCCUGCgggucgagCGGCACa- -3'
miRNA:   3'- cgCGUCC----AUCCAGGGCGa-------GUCGUGgg -5'
31005 3' -59.1 NC_006560.1 + 28103 0.67 0.709089
Target:  5'- cCGUGGGU-GGUCCCGCcugCGGU-CCUg -3'
miRNA:   3'- cGCGUCCAuCCAGGGCGa--GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 83508 0.67 0.709089
Target:  5'- cGCGCgagGGGgcGGg-CCGCgggCGcGCGCCCg -3'
miRNA:   3'- -CGCG---UCCauCCagGGCGa--GU-CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 147860 0.67 0.709089
Target:  5'- gGCGCAGaGcUGGGUCUCGUcgauGCGCuCCg -3'
miRNA:   3'- -CGCGUC-C-AUCCAGGGCGagu-CGUG-GG- -5'
31005 3' -59.1 NC_006560.1 + 23394 0.67 0.709089
Target:  5'- cCGCGGGcgucGUCgCCGCgCAGCGCCg -3'
miRNA:   3'- cGCGUCCauc-CAG-GGCGaGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 79654 0.67 0.709089
Target:  5'- cCGCAacguccGGcgcccCCCGCUCGGCGCCCc -3'
miRNA:   3'- cGCGU------CCauccaGGGCGAGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 54651 0.68 0.703218
Target:  5'- cGCGCGGGaugaGGGUCgcgggggcgcggcagCCGC-CGGCcgcGCCCu -3'
miRNA:   3'- -CGCGUCCa---UCCAG---------------GGCGaGUCG---UGGG- -5'
31005 3' -59.1 NC_006560.1 + 142727 0.68 0.699293
Target:  5'- gGCGCccGGG-GGGcCCgGCggagccCGGCGCCCg -3'
miRNA:   3'- -CGCG--UCCaUCCaGGgCGa-----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 24597 0.68 0.699293
Target:  5'- cGCGCAGGgcGuGcUCCUGCUCuccacgcGCgACCUg -3'
miRNA:   3'- -CGCGUCCauC-C-AGGGCGAGu------CG-UGGG- -5'
31005 3' -59.1 NC_006560.1 + 81194 0.68 0.699293
Target:  5'- gGCGCGGGUGGGgg-CGCgaCGGCgACCg -3'
miRNA:   3'- -CGCGUCCAUCCaggGCGa-GUCG-UGGg -5'
31005 3' -59.1 NC_006560.1 + 111983 0.68 0.699293
Target:  5'- aCGCGGGggaccuGGUcCCCGCgccgggcCAGCcggACCCg -3'
miRNA:   3'- cGCGUCCau----CCA-GGGCGa------GUCG---UGGG- -5'
31005 3' -59.1 NC_006560.1 + 39324 0.68 0.689443
Target:  5'- gGCGguGGggcGGGgccgCCCGCccUCGcgccuGCGCCCc -3'
miRNA:   3'- -CGCguCCa--UCCa---GGGCG--AGU-----CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.