miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 61066 0.67 0.756961
Target:  5'- aGCGCAGGggcccgUGGG-CgCUGCUgaAGCGCCUc -3'
miRNA:   3'- -CGCGUCC------AUCCaG-GGCGAg-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 14618 0.67 0.756961
Target:  5'- gGCGCGGcccucGGG-CCCGCgggCGGCACggCCg -3'
miRNA:   3'- -CGCGUCca---UCCaGGGCGa--GUCGUG--GG- -5'
31005 3' -59.1 NC_006560.1 + 149150 0.67 0.756961
Target:  5'- gGCGCGGGgcGGcCCCcaggggCGGCGCgCg -3'
miRNA:   3'- -CGCGUCCauCCaGGGcga---GUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 273 0.67 0.756961
Target:  5'- gGC-CGGGUcgcgAGG-CCCGCuUCGGUcCCCa -3'
miRNA:   3'- -CGcGUCCA----UCCaGGGCG-AGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 13618 0.67 0.756961
Target:  5'- cGCGcCAGGgcccGGUCcgCCGCcacguaGGCGCCCc -3'
miRNA:   3'- -CGC-GUCCau--CCAG--GGCGag----UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 218 0.67 0.747562
Target:  5'- cCGCGGG-AGGgcccggCCCGCggcUCGGUgcggGCCCc -3'
miRNA:   3'- cGCGUCCaUCCa-----GGGCG---AGUCG----UGGG- -5'
31005 3' -59.1 NC_006560.1 + 1292 0.67 0.747562
Target:  5'- cGCGCcGGgccgcccGGGUUCCGCccgcaCGGCuCCCg -3'
miRNA:   3'- -CGCGuCCa------UCCAGGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 93945 0.67 0.747562
Target:  5'- cGCGCAGcGcgAGGgcgagcgCCUGCUgGGCugUCu -3'
miRNA:   3'- -CGCGUC-Ca-UCCa------GGGCGAgUCGugGG- -5'
31005 3' -59.1 NC_006560.1 + 84049 0.67 0.744724
Target:  5'- uGCGCcaucgcggagaucgAGGUcgaccccuGGGcCCUGUUCGGgCACCCc -3'
miRNA:   3'- -CGCG--------------UCCA--------UCCaGGGCGAGUC-GUGGG- -5'
31005 3' -59.1 NC_006560.1 + 142463 0.67 0.740926
Target:  5'- cCGCAGGUgcggcggcggccgccGGcGUUuuGCuuucgguUCGGCGCCCg -3'
miRNA:   3'- cGCGUCCA---------------UC-CAGggCG-------AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 150454 0.67 0.739021
Target:  5'- gGCGCGGGUuuGGGcggggccggccccgcCCCGCgguccCGGC-CCCg -3'
miRNA:   3'- -CGCGUCCA--UCCa--------------GGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 125 0.67 0.739021
Target:  5'- gGCGCGGGUuuGGGcggggccggccccgcCCCGCgguccCGGC-CCCg -3'
miRNA:   3'- -CGCGUCCA--UCCa--------------GGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 3169 0.67 0.738068
Target:  5'- -aGCGGGU-GGUCCgagaGCUCGGCgacgacgcgcgGCUCg -3'
miRNA:   3'- cgCGUCCAuCCAGGg---CGAGUCG-----------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 41385 0.67 0.738068
Target:  5'- aGCGCucGGUc-GUCCUGgaCgAGCGCCCg -3'
miRNA:   3'- -CGCGu-CCAucCAGGGCgaG-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 12882 0.67 0.738068
Target:  5'- cGgGCGGGagcaGGGUgCUCGUggUCGGCGCCUu -3'
miRNA:   3'- -CgCGUCCa---UCCA-GGGCG--AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 32719 0.67 0.738068
Target:  5'- cGCGCGGGcccgGGGUCCguCGggggggCGGgGCCCg -3'
miRNA:   3'- -CGCGUCCa---UCCAGG--GCga----GUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 35541 0.67 0.738068
Target:  5'- cGCGCGGGgcgGGGgggCCgGCaaUUAGCGCg- -3'
miRNA:   3'- -CGCGUCCa--UCCa--GGgCG--AGUCGUGgg -5'
31005 3' -59.1 NC_006560.1 + 146777 0.67 0.738068
Target:  5'- cGCGCcugagucgGGGUcuGGGUCUgGgUCuGCGCCUg -3'
miRNA:   3'- -CGCG--------UCCA--UCCAGGgCgAGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 56043 0.67 0.732328
Target:  5'- uGCGUGGGgaAGGUCCCGUcgacCGaguacagcgggggguGCGCCCc -3'
miRNA:   3'- -CGCGUCCa-UCCAGGGCGa---GU---------------CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 15872 0.67 0.728484
Target:  5'- cGCgGCGGcGUGGGggCCgGCgacCGGCGCCa -3'
miRNA:   3'- -CG-CGUC-CAUCCa-GGgCGa--GUCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.