miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 134103 0.66 0.784489
Target:  5'- cGCGCAGGcgcucgauGGUCCCGaagaGGUuguugauguaGCCCu -3'
miRNA:   3'- -CGCGUCCau------CCAGGGCgag-UCG----------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 3521 0.66 0.781786
Target:  5'- gGCGCAGGcucuGGUUCCggaagagcaggucgGCggcggCGGCGCCg -3'
miRNA:   3'- -CGCGUCCau--CCAGGG--------------CGa----GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 103076 0.66 0.780882
Target:  5'- cCGCGGGgacggggggaccGGUCCCGCccccgCGG-ACCCg -3'
miRNA:   3'- cGCGUCCau----------CCAGGGCGa----GUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 11739 0.66 0.775433
Target:  5'- gGCGCGGGg----CCCGCagCGGCGCguCCg -3'
miRNA:   3'- -CGCGUCCauccaGGGCGa-GUCGUG--GG- -5'
31005 3' -59.1 NC_006560.1 + 147919 0.66 0.775433
Target:  5'- gGgGCGGGggagAGGgggCCCGC--GGCcCCCg -3'
miRNA:   3'- -CgCGUCCa---UCCa--GGGCGagUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 17769 0.66 0.775433
Target:  5'- gGCaGCGGGUAGucGUCguCCGCUCgacggccuccGGCcGCCCg -3'
miRNA:   3'- -CG-CGUCCAUC--CAG--GGCGAG----------UCG-UGGG- -5'
31005 3' -59.1 NC_006560.1 + 117988 0.66 0.775433
Target:  5'- gGCGCGGc--GGcgCCCGCggCGGCGgCCg -3'
miRNA:   3'- -CGCGUCcauCCa-GGGCGa-GUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 134458 0.66 0.775433
Target:  5'- gGCGCGGGcGGccCCCGCgggcccgCGGUcCCCg -3'
miRNA:   3'- -CGCGUCCaUCcaGGGCGa------GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 43769 0.66 0.775433
Target:  5'- uGCGCGGGccGG-CgCCGUugaccgcgacggUCAGCGCCa -3'
miRNA:   3'- -CGCGUCCauCCaG-GGCG------------AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 3243 0.66 0.766254
Target:  5'- cGUGUGGGcGGG-CCCGggCGGCGCgCg -3'
miRNA:   3'- -CGCGUCCaUCCaGGGCgaGUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 32893 0.66 0.766254
Target:  5'- cCGCGGGgGGGcgcgCCCGCggGGUAgCCg -3'
miRNA:   3'- cGCGUCCaUCCa---GGGCGagUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 35960 0.66 0.766254
Target:  5'- gGCGCGGGggcgGGGcuuguuaacuuUCCCGC-CAccuuCGCCCc -3'
miRNA:   3'- -CGCGUCCa---UCC-----------AGGGCGaGUc---GUGGG- -5'
31005 3' -59.1 NC_006560.1 + 40503 0.66 0.766254
Target:  5'- gGCGCAGG-AGGaUCUCGCa-GGcCACCg -3'
miRNA:   3'- -CGCGUCCaUCC-AGGGCGagUC-GUGGg -5'
31005 3' -59.1 NC_006560.1 + 53833 0.66 0.766254
Target:  5'- -gGCGGGccggcccGGG-CCgGC-CGGCACCCg -3'
miRNA:   3'- cgCGUCCa------UCCaGGgCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 2560 0.66 0.766254
Target:  5'- gGCGCGGcGcAGGUCgCGCgCGGCggGCCa -3'
miRNA:   3'- -CGCGUC-CaUCCAGgGCGaGUCG--UGGg -5'
31005 3' -59.1 NC_006560.1 + 6337 0.66 0.766254
Target:  5'- cGCGCGGGc--GcCCCGCccCGGCccGCCCu -3'
miRNA:   3'- -CGCGUCCaucCaGGGCGa-GUCG--UGGG- -5'
31005 3' -59.1 NC_006560.1 + 10463 0.66 0.766254
Target:  5'- cGCGCGGGggccaCgCCGcCUCGGgGCCCg -3'
miRNA:   3'- -CGCGUCCauccaG-GGC-GAGUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 47343 0.66 0.766254
Target:  5'- cGCGguGGUgcccAGGaaaCUGCacuUCAGCACCg -3'
miRNA:   3'- -CGCguCCA----UCCag-GGCG---AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 149850 0.66 0.766254
Target:  5'- cCGCGGGcGGGagaCCC-C-CGGCACCCc -3'
miRNA:   3'- cGCGUCCaUCCa--GGGcGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 273 0.67 0.756961
Target:  5'- gGC-CGGGUcgcgAGG-CCCGCuUCGGUcCCCa -3'
miRNA:   3'- -CGcGUCCA----UCCaGGGCG-AGUCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.