miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 12882 0.67 0.738068
Target:  5'- cGgGCGGGagcaGGGUgCUCGUggUCGGCGCCUu -3'
miRNA:   3'- -CgCGUCCa---UCCA-GGGCG--AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 13618 0.67 0.756961
Target:  5'- cGCGcCAGGgcccGGUCcgCCGCcacguaGGCGCCCc -3'
miRNA:   3'- -CGC-GUCCau--CCAG--GGCGag----UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 14204 0.66 0.802202
Target:  5'- gGCGUGGGguGGUCggGCggGGCGCCCg -3'
miRNA:   3'- -CGCGUCCauCCAGggCGagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 14618 0.67 0.756961
Target:  5'- gGCGCGGcccucGGG-CCCGCgggCGGCACggCCg -3'
miRNA:   3'- -CGCGUCca---UCCaGGGCGa--GUCGUG--GG- -5'
31005 3' -59.1 NC_006560.1 + 15872 0.67 0.728484
Target:  5'- cGCgGCGGcGUGGGggCCgGCgacCGGCGCCa -3'
miRNA:   3'- -CG-CGUC-CAUCCa-GGgCGa--GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 16311 0.66 0.785388
Target:  5'- gGCGCGGGcccgcgCCCGCgaggcgcaggcacagCAGCGCCg -3'
miRNA:   3'- -CGCGUCCaucca-GGGCGa--------------GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 17769 0.66 0.775433
Target:  5'- gGCaGCGGGUAGucGUCguCCGCUCgacggccuccGGCcGCCCg -3'
miRNA:   3'- -CG-CGUCCAUC--CAG--GGCGAG----------UCG-UGGG- -5'
31005 3' -59.1 NC_006560.1 + 19985 0.68 0.688456
Target:  5'- cCGCAGGUacggcAGGUCCgGgCUCcacucguccggguGGUGCCCc -3'
miRNA:   3'- cGCGUCCA-----UCCAGGgC-GAG-------------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 21037 0.68 0.669616
Target:  5'- gGC-CGGGgcGGggcgCCCGCgCGGCGuCCCc -3'
miRNA:   3'- -CGcGUCCauCCa---GGGCGaGUCGU-GGG- -5'
31005 3' -59.1 NC_006560.1 + 21256 0.68 0.679548
Target:  5'- cGCGCAGGcgcggugAGGgcggCgGCggcgCGGCGCCCu -3'
miRNA:   3'- -CGCGUCCa------UCCag--GgCGa---GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 23394 0.67 0.709089
Target:  5'- cCGCGGGcgucGUCgCCGCgCAGCGCCg -3'
miRNA:   3'- cGCGUCCauc-CAG-GGCGaGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 23601 0.71 0.483504
Target:  5'- cGCGCGccgcGGUCCCGCcgcgCGGCGCCg -3'
miRNA:   3'- -CGCGUccauCCAGGGCGa---GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 24597 0.68 0.699293
Target:  5'- cGCGCAGGgcGuGcUCCUGCUCuccacgcGCgACCUg -3'
miRNA:   3'- -CGCGUCCauC-C-AGGGCGAGu------CG-UGGG- -5'
31005 3' -59.1 NC_006560.1 + 26022 0.73 0.388132
Target:  5'- cCGCGGGggacccgcgcgcacGGUCCCGUcgGGCGCCCg -3'
miRNA:   3'- cGCGUCCau------------CCAGGGCGagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 26849 0.66 0.784489
Target:  5'- gGCGCGGcc-GGcCgCCGCccccCGGCGCCCg -3'
miRNA:   3'- -CGCGUCcauCCaG-GGCGa---GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 27156 0.69 0.589758
Target:  5'- cCGCGGGccGGGcccUCCCGCggCGGCGCgCg -3'
miRNA:   3'- cGCGUCCa-UCC---AGGGCGa-GUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 27299 0.75 0.311527
Target:  5'- gGCGCGGGgAGGgCCCGCcCGG-ACCCg -3'
miRNA:   3'- -CGCGUCCaUCCaGGGCGaGUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 27387 0.73 0.371222
Target:  5'- gGCGCGGGgggccGGGcccUCCCGCggCGGCGCgCg -3'
miRNA:   3'- -CGCGUCCa----UCC---AGGGCGa-GUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 27421 0.68 0.660652
Target:  5'- cGCGCGGGccuccGGcGUUUCGCguccgcguccucccgCGGCGCCCg -3'
miRNA:   3'- -CGCGUCCa----UC-CAGGGCGa--------------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 27595 0.75 0.291101
Target:  5'- cGCGCGGGUGGGcgCUCGCgccuGCuGCCCg -3'
miRNA:   3'- -CGCGUCCAUCCa-GGGCGagu-CG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.