miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 62748 0.73 0.402186
Target:  5'- cCGCAGG-GGGUggUCCGCggcgaggcacggCAGCGCCCg -3'
miRNA:   3'- cGCGUCCaUCCA--GGGCGa-----------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 55439 0.73 0.403861
Target:  5'- aGCGCAGGcGGGcgagCCCGg--GGCGCCCg -3'
miRNA:   3'- -CGCGUCCaUCCa---GGGCgagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 108418 0.73 0.403861
Target:  5'- cGCGuCAGGUAGccGUCggcgggagacgCCGCgccCAGCGCCCg -3'
miRNA:   3'- -CGC-GUCCAUC--CAG-----------GGCGa--GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 78895 0.72 0.420847
Target:  5'- uGCGCgAGGcguucccgGGGgcgCCCGCguacCGGCGCCCc -3'
miRNA:   3'- -CGCG-UCCa-------UCCa--GGGCGa---GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 10248 0.72 0.4295
Target:  5'- gGCGCGGGUcgcggcGGcCCCGgcCUCGGCuCCCg -3'
miRNA:   3'- -CGCGUCCAu-----CCaGGGC--GAGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 2120 0.72 0.465125
Target:  5'- gGCGCGGcGUcgGGGUCCgGCUCgggcagGGCGCgCg -3'
miRNA:   3'- -CGCGUC-CA--UCCAGGgCGAG------UCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 101242 0.71 0.47427
Target:  5'- cGCGCGGGUGcGGUUgaugaGCUCcAGCGCCg -3'
miRNA:   3'- -CGCGUCCAU-CCAGgg---CGAG-UCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 36857 0.71 0.47427
Target:  5'- -gGCGGGguucgAGcGUCCCGC-C-GCGCCCa -3'
miRNA:   3'- cgCGUCCa----UC-CAGGGCGaGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 96786 0.71 0.47427
Target:  5'- -aGguGG-AGG-CCCGCUCGGUGuCCCg -3'
miRNA:   3'- cgCguCCaUCCaGGGCGAGUCGU-GGG- -5'
31005 3' -59.1 NC_006560.1 + 54706 0.71 0.483504
Target:  5'- cGUGgGGGUcGGGUCCCagGCcaGGCACCCc -3'
miRNA:   3'- -CGCgUCCA-UCCAGGG--CGagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 23601 0.71 0.483504
Target:  5'- cGCGCGccgcGGUCCCGCcgcgCGGCGCCg -3'
miRNA:   3'- -CGCGUccauCCAGGGCGa---GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 43488 0.71 0.490954
Target:  5'- cUGCAGGUcguAGGUcgccCCCGCgccccccagccgCAGCGCCUg -3'
miRNA:   3'- cGCGUCCA---UCCA----GGGCGa-----------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 57254 0.71 0.492824
Target:  5'- gGCGCGGGggggccucgGGGUCCgGCgCGGC-CUCg -3'
miRNA:   3'- -CGCGUCCa--------UCCAGGgCGaGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 124210 0.71 0.502226
Target:  5'- -gGCAGacuacGUCCCGC-CGGCGCCCg -3'
miRNA:   3'- cgCGUCcauc-CAGGGCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 52337 0.71 0.511705
Target:  5'- gGCGCGGccGUGGGcgCCCuGCggCAGCGCuCCg -3'
miRNA:   3'- -CGCGUC--CAUCCa-GGG-CGa-GUCGUG-GG- -5'
31005 3' -59.1 NC_006560.1 + 73987 0.71 0.521258
Target:  5'- gGCGCGGGcccGGGUcCCCGCcCcGCcCCCg -3'
miRNA:   3'- -CGCGUCCa--UCCA-GGGCGaGuCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 114875 0.7 0.529914
Target:  5'- cGCGCGGG--GGUCgCCGCUCccGCauaaaagGCCCg -3'
miRNA:   3'- -CGCGUCCauCCAG-GGCGAGu-CG-------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 73179 0.7 0.530879
Target:  5'- gGCGCGGGggcggAGGgCCCGgcCUCGGC-CCUc -3'
miRNA:   3'- -CGCGUCCa----UCCaGGGC--GAGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 123480 0.7 0.530879
Target:  5'- cGCGCuGGggcAGGUCCUGCuggaggucguggUCAGCGCg- -3'
miRNA:   3'- -CGCGuCCa--UCCAGGGCG------------AGUCGUGgg -5'
31005 3' -59.1 NC_006560.1 + 142338 0.7 0.540564
Target:  5'- gGCGCAGccGGGcCCCGCgc-GCGCCUc -3'
miRNA:   3'- -CGCGUCcaUCCaGGGCGaguCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.