miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 126963 1.12 0.000968
Target:  5'- gGCGCAGGUAGGUCCCGCUCAGCACCCc -3'
miRNA:   3'- -CGCGUCCAUCCAGGGCGAGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 42980 0.81 0.127598
Target:  5'- cGCGCAGGUAGGcCuCCGCgaccGCGCCCc -3'
miRNA:   3'- -CGCGUCCAUCCaG-GGCGagu-CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 118218 0.79 0.181053
Target:  5'- cGUGCGGGacguGG-CCCGC-CGGCACCCg -3'
miRNA:   3'- -CGCGUCCau--CCaGGGCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 42558 0.78 0.214636
Target:  5'- cGCGCGGGgAGGcgCCCGCcgCGGCGgCCa -3'
miRNA:   3'- -CGCGUCCaUCCa-GGGCGa-GUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 1357 0.78 0.214636
Target:  5'- cGCGCGGGUcccccgcGG-CCCGCaCGGCGCCCc -3'
miRNA:   3'- -CGCGUCCAu------CCaGGGCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 100188 0.77 0.236136
Target:  5'- cGCGCGGGUgAGcGUCUCgGCgccCGGCGCCCa -3'
miRNA:   3'- -CGCGUCCA-UC-CAGGG-CGa--GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 40927 0.77 0.241216
Target:  5'- aGCGCGGcgGGGUCCCGCgggUCuucggggGGCGCCCg -3'
miRNA:   3'- -CGCGUCcaUCCAGGGCG---AG-------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 146544 0.77 0.241786
Target:  5'- gGCGCGGGcagcgAGG-CCCGCUUGGguCCCc -3'
miRNA:   3'- -CGCGUCCa----UCCaGGGCGAGUCguGGG- -5'
31005 3' -59.1 NC_006560.1 + 58375 0.76 0.259413
Target:  5'- cCGCGGGgggAGcGgcgCCCGCgUCGGCGCCCc -3'
miRNA:   3'- cGCGUCCa--UC-Ca--GGGCG-AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 60662 0.76 0.278075
Target:  5'- cGCGCGGGggcgAGGggccCCCGCgccccUGGCGCCCc -3'
miRNA:   3'- -CGCGUCCa---UCCa---GGGCGa----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 67284 0.76 0.278075
Target:  5'- gGCcCGGGUGGGUCgCCGCUC--CACCCc -3'
miRNA:   3'- -CGcGUCCAUCCAG-GGCGAGucGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 27595 0.75 0.291101
Target:  5'- cGCGCGGGUGGGcgCUCGCgccuGCuGCCCg -3'
miRNA:   3'- -CGCGUCCAUCCa-GGGCGagu-CG-UGGG- -5'
31005 3' -59.1 NC_006560.1 + 146852 0.75 0.291101
Target:  5'- gGCGCGGGgcGGggcggcgCCCgGCcCAGCGCCUg -3'
miRNA:   3'- -CGCGUCCauCCa------GGG-CGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 27299 0.75 0.311527
Target:  5'- gGCGCGGGgAGGgCCCGCcCGG-ACCCg -3'
miRNA:   3'- -CGCGUCCaUCCaGGGCGaGUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 87877 0.75 0.318574
Target:  5'- gGCGCGGGUGGGggggcgcgccgUCCCGg-CcGCGCCCc -3'
miRNA:   3'- -CGCGUCCAUCC-----------AGGGCgaGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 96730 0.74 0.32574
Target:  5'- cGCGCGGGUcgAGGccuuccaCCGCUaCGGCACCa -3'
miRNA:   3'- -CGCGUCCA--UCCag-----GGCGA-GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 81981 0.74 0.340428
Target:  5'- uGgGCAGGUAGGgcCCCGCcUC-GCACUCc -3'
miRNA:   3'- -CgCGUCCAUCCa-GGGCG-AGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 27387 0.73 0.371222
Target:  5'- gGCGCGGGgggccGGGcccUCCCGCggCGGCGCgCg -3'
miRNA:   3'- -CGCGUCCa----UCC---AGGGCGa-GUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 26022 0.73 0.388132
Target:  5'- cCGCGGGggacccgcgcgcacGGUCCCGUcgGGCGCCCg -3'
miRNA:   3'- cGCGUCCau------------CCAGGGCGagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 53762 0.73 0.395532
Target:  5'- cGCuGCGGGgcGG-CCCGUcggucgCGGCGCCCc -3'
miRNA:   3'- -CG-CGUCCauCCaGGGCGa-----GUCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.