miRNA display CGI


Results 1 - 20 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 125 0.67 0.739021
Target:  5'- gGCGCGGGUuuGGGcggggccggccccgcCCCGCgguccCGGC-CCCg -3'
miRNA:   3'- -CGCGUCCA--UCCa--------------GGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 218 0.67 0.747562
Target:  5'- cCGCGGG-AGGgcccggCCCGCggcUCGGUgcggGCCCc -3'
miRNA:   3'- cGCGUCCaUCCa-----GGGCG---AGUCG----UGGG- -5'
31005 3' -59.1 NC_006560.1 + 273 0.67 0.756961
Target:  5'- gGC-CGGGUcgcgAGG-CCCGCuUCGGUcCCCa -3'
miRNA:   3'- -CGcGUCCA----UCCaGGGCG-AGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 1292 0.67 0.747562
Target:  5'- cGCGCcGGgccgcccGGGUUCCGCccgcaCGGCuCCCg -3'
miRNA:   3'- -CGCGuCCa------UCCAGGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 1357 0.78 0.214636
Target:  5'- cGCGCGGGUcccccgcGG-CCCGCaCGGCGCCCc -3'
miRNA:   3'- -CGCGUCCAu------CCaGGGCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 2120 0.72 0.465125
Target:  5'- gGCGCGGcGUcgGGGUCCgGCUCgggcagGGCGCgCg -3'
miRNA:   3'- -CGCGUC-CA--UCCAGGgCGAG------UCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 2560 0.66 0.766254
Target:  5'- gGCGCGGcGcAGGUCgCGCgCGGCggGCCa -3'
miRNA:   3'- -CGCGUC-CaUCCAGgGCGaGUCG--UGGg -5'
31005 3' -59.1 NC_006560.1 + 3169 0.67 0.738068
Target:  5'- -aGCGGGU-GGUCCgagaGCUCGGCgacgacgcgcgGCUCg -3'
miRNA:   3'- cgCGUCCAuCCAGGg---CGAGUCG-----------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 3243 0.66 0.766254
Target:  5'- cGUGUGGGcGGG-CCCGggCGGCGCgCg -3'
miRNA:   3'- -CGCGUCCaUCCaGGGCgaGUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 3521 0.66 0.781786
Target:  5'- gGCGCAGGcucuGGUUCCggaagagcaggucgGCggcggCGGCGCCg -3'
miRNA:   3'- -CGCGUCCau--CCAGGG--------------CGa----GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 4175 0.69 0.589758
Target:  5'- gGCGUGGGccAGGcCCCaGCcgaAGCGCCCg -3'
miRNA:   3'- -CGCGUCCa-UCCaGGG-CGag-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 4407 0.69 0.629675
Target:  5'- cGCGCGGcGUcg--CCCaGCUCGgGCGCCCa -3'
miRNA:   3'- -CGCGUC-CAuccaGGG-CGAGU-CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 6337 0.66 0.766254
Target:  5'- cGCGCGGGc--GcCCCGCccCGGCccGCCCu -3'
miRNA:   3'- -CGCGUCCaucCaGGGCGa-GUCG--UGGG- -5'
31005 3' -59.1 NC_006560.1 + 8305 0.68 0.659654
Target:  5'- -gGUGGGUGuGGUCCCuuUCGcGCACCUc -3'
miRNA:   3'- cgCGUCCAU-CCAGGGcgAGU-CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 8926 0.66 0.802202
Target:  5'- gGCGCGGGgcgcgGGGggcuuuuaugCgCCGCggGGCGCCg -3'
miRNA:   3'- -CGCGUCCa----UCCa---------G-GGCGagUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 10248 0.72 0.4295
Target:  5'- gGCGCGGGUcgcggcGGcCCCGgcCUCGGCuCCCg -3'
miRNA:   3'- -CGCGUCCAu-----CCaGGGC--GAGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 10463 0.66 0.766254
Target:  5'- cGCGCGGGggccaCgCCGcCUCGGgGCCCg -3'
miRNA:   3'- -CGCGUCCauccaG-GGC-GAGUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 10661 0.68 0.649672
Target:  5'- cGCGCGGG--GGU-CCGCccgGGCGCCCc -3'
miRNA:   3'- -CGCGUCCauCCAgGGCGag-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 11739 0.66 0.775433
Target:  5'- gGCGCGGGg----CCCGCagCGGCGCguCCg -3'
miRNA:   3'- -CGCGUCCauccaGGGCGa-GUCGUG--GG- -5'
31005 3' -59.1 NC_006560.1 + 11979 0.67 0.709089
Target:  5'- -gGCGGGgcucUGGGUCCUGCgggucgagCGGCACa- -3'
miRNA:   3'- cgCGUCC----AUCCAGGGCGa-------GUCGUGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.