miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 150454 0.67 0.739021
Target:  5'- gGCGCGGGUuuGGGcggggccggccccgcCCCGCgguccCGGC-CCCg -3'
miRNA:   3'- -CGCGUCCA--UCCa--------------GGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 149850 0.66 0.766254
Target:  5'- cCGCGGGcGGGagaCCC-C-CGGCACCCc -3'
miRNA:   3'- cGCGUCCaUCCa--GGGcGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 149360 0.68 0.649672
Target:  5'- cCGCGGGgAGGagCCGggCGGCGCCg -3'
miRNA:   3'- cGCGUCCaUCCagGGCgaGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 149150 0.67 0.756961
Target:  5'- gGCGCGGGgcGGcCCCcaggggCGGCGCgCg -3'
miRNA:   3'- -CGCGUCCauCCaGGGcga---GUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 147919 0.66 0.775433
Target:  5'- gGgGCGGGggagAGGgggCCCGC--GGCcCCCg -3'
miRNA:   3'- -CgCGUCCa---UCCa--GGGCGagUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 147860 0.67 0.709089
Target:  5'- gGCGCAGaGcUGGGUCUCGUcgauGCGCuCCg -3'
miRNA:   3'- -CGCGUC-C-AUCCAGGGCGagu-CGUG-GG- -5'
31005 3' -59.1 NC_006560.1 + 147214 0.7 0.550307
Target:  5'- gGCGCGGGgggccgGGGcgccUCCCGCUCcuGCuCCUc -3'
miRNA:   3'- -CGCGUCCa-----UCC----AGGGCGAGu-CGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 146852 0.75 0.291101
Target:  5'- gGCGCGGGgcGGggcggcgCCCgGCcCAGCGCCUg -3'
miRNA:   3'- -CGCGUCCauCCa------GGG-CGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 146777 0.67 0.738068
Target:  5'- cGCGCcugagucgGGGUcuGGGUCUgGgUCuGCGCCUg -3'
miRNA:   3'- -CGCG--------UCCA--UCCAGGgCgAGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 146544 0.77 0.241786
Target:  5'- gGCGCGGGcagcgAGG-CCCGCUUGGguCCCc -3'
miRNA:   3'- -CGCGUCCa----UCCaGGGCGAGUCguGGG- -5'
31005 3' -59.1 NC_006560.1 + 146300 0.68 0.676572
Target:  5'- gGCGCGgucggcguccacguGGUGGGUCuuCCGCgcacacuuccUCGGCcCCCg -3'
miRNA:   3'- -CGCGU--------------CCAUCCAG--GGCG----------AGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 145831 0.66 0.793415
Target:  5'- cGCGCGGcGggccgGGGgcgcCCCcCUCGGCcCCCc -3'
miRNA:   3'- -CGCGUC-Ca----UCCa---GGGcGAGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 144271 0.69 0.633675
Target:  5'- uGCGCGGGgaccccccuccUCCCGC-CGGCGCUCc -3'
miRNA:   3'- -CGCGUCCaucc-------AGGGCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 143023 0.68 0.659654
Target:  5'- gGCGggaCAGGUAGGUuccucCCCGCgaccCGCCCg -3'
miRNA:   3'- -CGC---GUCCAUCCA-----GGGCGagucGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 142727 0.68 0.699293
Target:  5'- gGCGCccGGG-GGGcCCgGCggagccCGGCGCCCg -3'
miRNA:   3'- -CGCG--UCCaUCCaGGgCGa-----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 142463 0.67 0.740926
Target:  5'- cCGCAGGUgcggcggcggccgccGGcGUUuuGCuuucgguUCGGCGCCCg -3'
miRNA:   3'- cGCGUCCA---------------UC-CAGggCG-------AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 142338 0.7 0.540564
Target:  5'- gGCGCAGccGGGcCCCGCgc-GCGCCUc -3'
miRNA:   3'- -CGCGUCcaUCCaGGGCGaguCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 140373 0.66 0.792529
Target:  5'- gGCGCGGcccgAGGUCCgguCGUccccgggggggguUCAGCGCCg -3'
miRNA:   3'- -CGCGUCca--UCCAGG---GCG-------------AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 139717 0.68 0.689443
Target:  5'- aCGCGGGgucgGGGcggaUCgCGCUCugggcgugGGCGCCCc -3'
miRNA:   3'- cGCGUCCa---UCC----AGgGCGAG--------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 139286 0.69 0.639676
Target:  5'- gGCGCGGGggggcaccGGGUgcCCCGUg-GGCGCCUc -3'
miRNA:   3'- -CGCGUCCa-------UCCA--GGGCGagUCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.