miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 28103 0.67 0.709089
Target:  5'- cCGUGGGU-GGUCCCGCcugCGGU-CCUg -3'
miRNA:   3'- cGCGUCCAuCCAGGGCGa--GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 32719 0.67 0.738068
Target:  5'- cGCGCGGGcccgGGGUCCguCGggggggCGGgGCCCg -3'
miRNA:   3'- -CGCGUCCa---UCCAGG--GCga----GUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 32893 0.66 0.766254
Target:  5'- cCGCGGGgGGGcgcgCCCGCggGGUAgCCg -3'
miRNA:   3'- cGCGUCCaUCCa---GGGCGagUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 33181 0.68 0.679548
Target:  5'- cCGCGGGgaagGGG-CCCGCggggaaGGCGgCCg -3'
miRNA:   3'- cGCGUCCa---UCCaGGGCGag----UCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 34782 0.69 0.638676
Target:  5'- cCGCAGGUgucgggggcugcgGGGUUCCGCggcgCGGCcgggGCCa -3'
miRNA:   3'- cGCGUCCA-------------UCCAGGGCGa---GUCG----UGGg -5'
31005 3' -59.1 NC_006560.1 + 35541 0.67 0.738068
Target:  5'- cGCGCGGGgcgGGGgggCCgGCaaUUAGCGCg- -3'
miRNA:   3'- -CGCGUCCa--UCCa--GGgCG--AGUCGUGgg -5'
31005 3' -59.1 NC_006560.1 + 35960 0.66 0.766254
Target:  5'- gGCGCGGGggcgGGGcuuguuaacuuUCCCGC-CAccuuCGCCCc -3'
miRNA:   3'- -CGCGUCCa---UCC-----------AGGGCGaGUc---GUGGG- -5'
31005 3' -59.1 NC_006560.1 + 36857 0.71 0.47427
Target:  5'- -gGCGGGguucgAGcGUCCCGC-C-GCGCCCa -3'
miRNA:   3'- cgCGUCCa----UC-CAGGGCGaGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 37694 0.67 0.756961
Target:  5'- gGCGCcGGgccgcucuugauGGUCCCcgcGCUgaacggacggccgcaCAGCACCCg -3'
miRNA:   3'- -CGCGuCCau----------CCAGGG---CGA---------------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 39324 0.68 0.689443
Target:  5'- gGCGguGGggcGGGgccgCCCGCccUCGcgccuGCGCCCc -3'
miRNA:   3'- -CGCguCCa--UCCa---GGGCG--AGU-----CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 39644 0.68 0.669616
Target:  5'- gGCGC-GGcGGaGUCuCCGCUCGggccgcggccGCGCCCc -3'
miRNA:   3'- -CGCGuCCaUC-CAG-GGCGAGU----------CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 40503 0.66 0.766254
Target:  5'- gGCGCAGG-AGGaUCUCGCa-GGcCACCg -3'
miRNA:   3'- -CGCGUCCaUCC-AGGGCGagUC-GUGGg -5'
31005 3' -59.1 NC_006560.1 + 40927 0.77 0.241216
Target:  5'- aGCGCGGcgGGGUCCCGCgggUCuucggggGGCGCCCg -3'
miRNA:   3'- -CGCGUCcaUCCAGGGCG---AG-------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 41385 0.67 0.738068
Target:  5'- aGCGCucGGUc-GUCCUGgaCgAGCGCCCg -3'
miRNA:   3'- -CGCGu-CCAucCAGGGCgaG-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 42558 0.78 0.214636
Target:  5'- cGCGCGGGgAGGcgCCCGCcgCGGCGgCCa -3'
miRNA:   3'- -CGCGUCCaUCCa-GGGCGa-GUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 42980 0.81 0.127598
Target:  5'- cGCGCAGGUAGGcCuCCGCgaccGCGCCCc -3'
miRNA:   3'- -CGCGUCCAUCCaG-GGCGagu-CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 43488 0.71 0.490954
Target:  5'- cUGCAGGUcguAGGUcgccCCCGCgccccccagccgCAGCGCCUg -3'
miRNA:   3'- cGCGUCCA---UCCA----GGGCGa-----------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 43769 0.66 0.775433
Target:  5'- uGCGCGGGccGG-CgCCGUugaccgcgacggUCAGCGCCa -3'
miRNA:   3'- -CGCGUCCauCCaG-GGCG------------AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 44822 0.7 0.560104
Target:  5'- cGCGC-GGcAGGU-CUGCgCGGCACCCc -3'
miRNA:   3'- -CGCGuCCaUCCAgGGCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 45780 0.66 0.802202
Target:  5'- gGCGCGGGcucGGU-CCGC-CGGgGCCUu -3'
miRNA:   3'- -CGCGUCCau-CCAgGGCGaGUCgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.