miRNA display CGI


Results 41 - 60 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 5' -54 NC_006560.1 + 78762 0.68 0.918759
Target:  5'- ---cGUGGGCGGCGAGGa--GaUCgAGGa -3'
miRNA:   3'- ucuuCACCCGCCGCUUCaugC-AG-UCC- -5'
31005 5' -54 NC_006560.1 + 57045 0.68 0.918759
Target:  5'- cAGGAGcgGGGUGGUGAGGUcccacggaaccaGCGcCuGGg -3'
miRNA:   3'- -UCUUCa-CCCGCCGCUUCA------------UGCaGuCC- -5'
31005 5' -54 NC_006560.1 + 101699 0.68 0.918759
Target:  5'- aGGAAGgcgGcGGCGGCGcGGUugaccuCGUCGGc -3'
miRNA:   3'- -UCUUCa--C-CCGCCGCuUCAu-----GCAGUCc -5'
31005 5' -54 NC_006560.1 + 26802 0.68 0.916456
Target:  5'- gGGGAGagcgagaccgacgGGGCGcGCGggGgACGcCGGGg -3'
miRNA:   3'- -UCUUCa------------CCCGC-CGCuuCaUGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 71348 0.68 0.913522
Target:  5'- gGGAGG-GGGCGGCGGGcgGCGgaaacaccacacgggCGGGc -3'
miRNA:   3'- -UCUUCaCCCGCCGCUUcaUGCa--------------GUCC- -5'
31005 5' -54 NC_006560.1 + 42843 0.68 0.912928
Target:  5'- uGGgcG-GGGCGGCGGgccagccguGGgGCGUCAGc -3'
miRNA:   3'- -UCuuCaCCCGCCGCU---------UCaUGCAGUCc -5'
31005 5' -54 NC_006560.1 + 3328 0.68 0.912928
Target:  5'- cGGggGcgcGGGCgGGCGgcGUcgGCGUCGGc -3'
miRNA:   3'- -UCuuCa--CCCG-CCGCuuCA--UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 101361 0.68 0.912928
Target:  5'- cGAGGcacaGGGCGGCGAGGccgggaaacagcUGgGUCAGc -3'
miRNA:   3'- uCUUCa---CCCGCCGCUUC------------AUgCAGUCc -5'
31005 5' -54 NC_006560.1 + 61877 0.68 0.912928
Target:  5'- cGAAG-GaGGCGGCGAAGaagaugcccuCGaUCAGGa -3'
miRNA:   3'- uCUUCaC-CCGCCGCUUCau--------GC-AGUCC- -5'
31005 5' -54 NC_006560.1 + 126746 0.68 0.906856
Target:  5'- cGGAGGaGGacgacgagcGCGGCGAAcGUGgcCGUCAGGc -3'
miRNA:   3'- -UCUUCaCC---------CGCCGCUU-CAU--GCAGUCC- -5'
31005 5' -54 NC_006560.1 + 12337 0.68 0.906856
Target:  5'- cGGAGGcaccucgGGGCuGGCGggGcggGCGUCucgacGGGg -3'
miRNA:   3'- -UCUUCa------CCCG-CCGCuuCa--UGCAG-----UCC- -5'
31005 5' -54 NC_006560.1 + 33783 0.68 0.906856
Target:  5'- cGggGccgugGGGCGcGCGAAGU-CG-CGGGc -3'
miRNA:   3'- uCuuCa----CCCGC-CGCUUCAuGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 12714 0.68 0.905613
Target:  5'- cGGggGUGGG-GGCGggGcccuggauggugACGUCGucGGc -3'
miRNA:   3'- -UCuuCACCCgCCGCuuCa-----------UGCAGU--CC- -5'
31005 5' -54 NC_006560.1 + 36013 0.68 0.903099
Target:  5'- aGGggGUGGGgGGCccGggGUguauuuggcuuguccGCG-CGGGu -3'
miRNA:   3'- -UCuuCACCCgCCG--CuuCA---------------UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 45240 0.68 0.894001
Target:  5'- gGGAGGgccgGGGgGGCGucuguGGcGCGUgCGGGg -3'
miRNA:   3'- -UCUUCa---CCCgCCGCu----UCaUGCA-GUCC- -5'
31005 5' -54 NC_006560.1 + 77673 0.68 0.894001
Target:  5'- uGggGUGGGCGcGCGGAGaggGCG-CGc- -3'
miRNA:   3'- uCuuCACCCGC-CGCUUCa--UGCaGUcc -5'
31005 5' -54 NC_006560.1 + 90460 0.68 0.894001
Target:  5'- gGGggGcGGGaCGGCGggGccgcaaagGCGgccCAGGg -3'
miRNA:   3'- -UCuuCaCCC-GCCGCuuCa-------UGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 11938 0.68 0.894001
Target:  5'- cAGGAG-GGGcCGGCGGgccaGGUccaGgGUCAGGu -3'
miRNA:   3'- -UCUUCaCCC-GCCGCU----UCA---UgCAGUCC- -5'
31005 5' -54 NC_006560.1 + 80863 0.69 0.887224
Target:  5'- cGGGcUGGGCGGCGggGgcggccagaaACGgCAGGu -3'
miRNA:   3'- uCUUcACCCGCCGCuuCa---------UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 26498 0.69 0.887224
Target:  5'- gGGggGcGGGCGcGCGAGGggGCGg-GGGc -3'
miRNA:   3'- -UCuuCaCCCGC-CGCUUCa-UGCagUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.