miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 5' -54 NC_006560.1 + 74195 0.66 0.952828
Target:  5'- -cGGGUGGuGCGGCGGAGc---UCGGGc -3'
miRNA:   3'- ucUUCACC-CGCCGCUUCaugcAGUCC- -5'
31005 5' -54 NC_006560.1 + 32074 0.67 0.948677
Target:  5'- cAGggGccgcaGGGCgGGCGggG-GCGgCAGGu -3'
miRNA:   3'- -UCuuCa----CCCG-CCGCuuCaUGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 102838 0.67 0.948677
Target:  5'- cGAGGgGGGCGGCGGuugGGgaaugGCGagcCGGGc -3'
miRNA:   3'- uCUUCaCCCGCCGCU---UCa----UGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 14556 0.67 0.948677
Target:  5'- gGGAGG-GGGCGGCGgcGcucACGccUCGGa -3'
miRNA:   3'- -UCUUCaCCCGCCGCuuCa--UGC--AGUCc -5'
31005 5' -54 NC_006560.1 + 65961 0.67 0.944741
Target:  5'- -cAGGcGGGCGGCGcGGUGCGgcgccucgaccugccCGGGa -3'
miRNA:   3'- ucUUCaCCCGCCGCuUCAUGCa--------------GUCC- -5'
31005 5' -54 NC_006560.1 + 39890 0.67 0.944291
Target:  5'- cGAGGcGGGUcuccgucguucgGGcCGggGUGCGcUCGGGu -3'
miRNA:   3'- uCUUCaCCCG------------CC-GCuuCAUGC-AGUCC- -5'
31005 5' -54 NC_006560.1 + 82622 0.67 0.944291
Target:  5'- cGGcGGcUGGGCGGCGggG-GCGUUc-- -3'
miRNA:   3'- -UCuUC-ACCCGCCGCuuCaUGCAGucc -5'
31005 5' -54 NC_006560.1 + 146016 0.67 0.944291
Target:  5'- aGGccGUGGGCGGgGucucccGGGUAC-UCGGGc -3'
miRNA:   3'- -UCuuCACCCGCCgC------UUCAUGcAGUCC- -5'
31005 5' -54 NC_006560.1 + 139844 0.67 0.94384
Target:  5'- cGAGGcGGGCucuccgcGGCGGAc--CGUCAGGg -3'
miRNA:   3'- uCUUCaCCCG-------CCGCUUcauGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 61529 0.67 0.939667
Target:  5'- gGGAAGcUGGG-GGCGggGgcggggGCGccaaaCAGGg -3'
miRNA:   3'- -UCUUC-ACCCgCCGCuuCa-----UGCa----GUCC- -5'
31005 5' -54 NC_006560.1 + 23 0.67 0.939667
Target:  5'- gGGcGGUucGGCGGCGGggggGGUGCGUUugGGGg -3'
miRNA:   3'- -UCuUCAc-CCGCCGCU----UCAUGCAG--UCC- -5'
31005 5' -54 NC_006560.1 + 2465 0.67 0.939667
Target:  5'- -----aGGcGCGGCGGcGGcGCGUCGGGg -3'
miRNA:   3'- ucuucaCC-CGCCGCU-UCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 150352 0.67 0.939667
Target:  5'- gGGcGGUucGGCGGCGGggggGGUGCGUUugGGGg -3'
miRNA:   3'- -UCuUCAc-CCGCCGCU----UCAUGCAG--UCC- -5'
31005 5' -54 NC_006560.1 + 29137 0.67 0.934803
Target:  5'- gGGGAGUGGGCucccGGCGcauauaACGcCGGGg -3'
miRNA:   3'- -UCUUCACCCG----CCGCuuca--UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 17702 0.67 0.934803
Target:  5'- gGGucGUGGGCGGCGGccGGaaaaccgACGcccCGGGg -3'
miRNA:   3'- -UCuuCACCCGCCGCU--UCa------UGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 4852 0.67 0.929697
Target:  5'- cGgcGccGGCGGCGAGGUucGCGUCGa- -3'
miRNA:   3'- uCuuCacCCGCCGCUUCA--UGCAGUcc -5'
31005 5' -54 NC_006560.1 + 33075 0.67 0.929697
Target:  5'- gAGggGaaGGCGGgGAAGgcggGCGagggCAGGg -3'
miRNA:   3'- -UCuuCacCCGCCgCUUCa---UGCa---GUCC- -5'
31005 5' -54 NC_006560.1 + 26648 0.67 0.924349
Target:  5'- gGGggGgacgGGGCcGCGggGgggACGgggccgCGGGg -3'
miRNA:   3'- -UCuuCa---CCCGcCGCuuCa--UGCa-----GUCC- -5'
31005 5' -54 NC_006560.1 + 135365 0.67 0.922698
Target:  5'- cGGAGUcgcgcggccacgcgGGGgGGCGGAGgcCG-CGGGg -3'
miRNA:   3'- uCUUCA--------------CCCgCCGCUUCauGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 57045 0.68 0.918759
Target:  5'- cAGGAGcgGGGUGGUGAGGUcccacggaaccaGCGcCuGGg -3'
miRNA:   3'- -UCUUCa-CCCGCCGCUUCA------------UGCaGuCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.