miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 5' -54 NC_006560.1 + 62752 0.72 0.712493
Target:  5'- aGGggGUGGuccGCGGCGAGGcACGgCAGc -3'
miRNA:   3'- -UCuuCACC---CGCCGCUUCaUGCaGUCc -5'
31005 5' -54 NC_006560.1 + 140491 0.72 0.712493
Target:  5'- gAGGAGguggGGGCGGCGggGgagaaGggcugCGGGg -3'
miRNA:   3'- -UCUUCa---CCCGCCGCuuCaug--Ca----GUCC- -5'
31005 5' -54 NC_006560.1 + 11107 0.72 0.728455
Target:  5'- cGGAGGaGGGCGGgGggGgggggcucagcggGCGUCgAGGg -3'
miRNA:   3'- -UCUUCaCCCGCCgCuuCa------------UGCAG-UCC- -5'
31005 5' -54 NC_006560.1 + 4015 0.72 0.732413
Target:  5'- cGAGGccggGGGCGGCGgcG-GCGUCccGGGg -3'
miRNA:   3'- uCUUCa---CCCGCCGCuuCaUGCAG--UCC- -5'
31005 5' -54 NC_006560.1 + 5263 0.72 0.732413
Target:  5'- cGAGGacgcggcgGcGGCGGCGAGGUcgGCGUCGGc -3'
miRNA:   3'- uCUUCa-------C-CCGCCGCUUCA--UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 93992 0.72 0.742246
Target:  5'- gGGAGG-GGGCcggGGCGggGgACGUCGcGGc -3'
miRNA:   3'- -UCUUCaCCCG---CCGCuuCaUGCAGU-CC- -5'
31005 5' -54 NC_006560.1 + 34063 0.72 0.742246
Target:  5'- uGAGGaGGGgGGCGAGGggACGagGGGg -3'
miRNA:   3'- uCUUCaCCCgCCGCUUCa-UGCagUCC- -5'
31005 5' -54 NC_006560.1 + 34403 0.72 0.751981
Target:  5'- gGGggGUGgGGCGGCGGccGGUGgGgaggaGGGa -3'
miRNA:   3'- -UCuuCAC-CCGCCGCU--UCAUgCag---UCC- -5'
31005 5' -54 NC_006560.1 + 107976 0.72 0.751981
Target:  5'- cGggGaGGGCGGCGccGggACGUCGGc -3'
miRNA:   3'- uCuuCaCCCGCCGCuuCa-UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 66517 0.71 0.76161
Target:  5'- cGGuAGUuGGCGGUGAcGUGCGUCcGGa -3'
miRNA:   3'- -UCuUCAcCCGCCGCUuCAUGCAGuCC- -5'
31005 5' -54 NC_006560.1 + 143700 0.71 0.771122
Target:  5'- aGGggGcGGGacgaGGCGAgagcgGGcGCGUCGGGg -3'
miRNA:   3'- -UCuuCaCCCg---CCGCU-----UCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 43814 0.71 0.771122
Target:  5'- gGGggGUGuGGaUGGCGAAGguggccuccGCGUCgAGGg -3'
miRNA:   3'- -UCuuCAC-CC-GCCGCUUCa--------UGCAG-UCC- -5'
31005 5' -54 NC_006560.1 + 85556 0.71 0.780508
Target:  5'- ---cGUGGGgGGCGggGgcgGC-UCGGGg -3'
miRNA:   3'- ucuuCACCCgCCGCuuCa--UGcAGUCC- -5'
31005 5' -54 NC_006560.1 + 141629 0.71 0.780508
Target:  5'- aGGAAG-GGGgGGgGAAGggACGgCAGGg -3'
miRNA:   3'- -UCUUCaCCCgCCgCUUCa-UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 33818 0.71 0.780508
Target:  5'- cGGggGgcggGGGuCGGCGggGgucggccgcggGCGUgGGGg -3'
miRNA:   3'- -UCuuCa---CCC-GCCGCuuCa----------UGCAgUCC- -5'
31005 5' -54 NC_006560.1 + 73817 0.71 0.798868
Target:  5'- cGAGG-GGGCGGUGAaggAGUACuuccugCGGGg -3'
miRNA:   3'- uCUUCaCCCGCCGCU---UCAUGca----GUCC- -5'
31005 5' -54 NC_006560.1 + 99881 0.71 0.798868
Target:  5'- cGGggGUcGuGGCGGCGgcGgGCGgcgCGGGg -3'
miRNA:   3'- -UCuuCA-C-CCGCCGCuuCaUGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 28060 0.7 0.816617
Target:  5'- gGGGucGGUGGGCGGUccuGggGUGaGUCGGu -3'
miRNA:   3'- -UCU--UCACCCGCCG---CuuCAUgCAGUCc -5'
31005 5' -54 NC_006560.1 + 21001 0.7 0.816617
Target:  5'- gGGAAGggcgGGGCGGCGGgcccgccccgaAGgGCGggcCGGGg -3'
miRNA:   3'- -UCUUCa---CCCGCCGCU-----------UCaUGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 102788 0.7 0.816617
Target:  5'- gGGggGUGGGUGGaagacgGggGUgcGCGUCGa- -3'
miRNA:   3'- -UCuuCACCCGCCg-----CuuCA--UGCAGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.