miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 5' -54 NC_006560.1 + 126998 1.1 0.004227
Target:  5'- cAGAAGUGGGCGGCGAAGUACGUCAGGc -3'
miRNA:   3'- -UCUUCACCCGCCGCUUCAUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 10231 0.86 0.145249
Target:  5'- uAGggGUGGGCGGCGggG-GCG-CGGGu -3'
miRNA:   3'- -UCuuCACCCGCCGCuuCaUGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 147063 0.8 0.311952
Target:  5'- gGGAGGcGGGCGGCGAGucgGCGaUCAGGa -3'
miRNA:   3'- -UCUUCaCCCGCCGCUUca-UGC-AGUCC- -5'
31005 5' -54 NC_006560.1 + 32983 0.79 0.37361
Target:  5'- gGGggGUGGGCGG-GAAGgccgGCGagggCAGGg -3'
miRNA:   3'- -UCuuCACCCGCCgCUUCa---UGCa---GUCC- -5'
31005 5' -54 NC_006560.1 + 33013 0.78 0.424989
Target:  5'- nGGggGUGGGCGG-GAAGgccgGCGagGGGa -3'
miRNA:   3'- -UCuuCACCCGCCgCUUCa---UGCagUCC- -5'
31005 5' -54 NC_006560.1 + 133582 0.76 0.499584
Target:  5'- cGAAGaGGGCGGCcAGGUcUGUCAGGu -3'
miRNA:   3'- uCUUCaCCCGCCGcUUCAuGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 15563 0.76 0.509327
Target:  5'- cAGGAGgcucugggGGGCGGCGGAG-ACGUaggcCAGGu -3'
miRNA:   3'- -UCUUCa-------CCCGCCGCUUCaUGCA----GUCC- -5'
31005 5' -54 NC_006560.1 + 108508 0.75 0.536011
Target:  5'- gGGggGaGGGCGGCcggcggcgggcccgGggGcGCGUCGGGg -3'
miRNA:   3'- -UCuuCaCCCGCCG--------------CuuCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 14019 0.75 0.539007
Target:  5'- cGAGGgcccGGCGGaCGggGUcGCGUCGGGg -3'
miRNA:   3'- uCUUCac--CCGCC-GCuuCA-UGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 59423 0.75 0.559119
Target:  5'- gAGggGgcccGGuGCGGaCGAggggGGUGCGUCGGGa -3'
miRNA:   3'- -UCuuCa---CC-CGCC-GCU----UCAUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 9078 0.75 0.579435
Target:  5'- gGGGAG-GGGCGGCGggGcgACGgCGGa -3'
miRNA:   3'- -UCUUCaCCCGCCGCuuCa-UGCaGUCc -5'
31005 5' -54 NC_006560.1 + 92975 0.74 0.599904
Target:  5'- -----cGGGCGGCGcGG-ACGUCGGGg -3'
miRNA:   3'- ucuucaCCCGCCGCuUCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 33623 0.74 0.610178
Target:  5'- cAGGAGcaggGGGgGGCGggGgGCGcCGGGg -3'
miRNA:   3'- -UCUUCa---CCCgCCGCuuCaUGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 102929 0.74 0.620469
Target:  5'- cGGggGaccgGGGCGGCGGcgcGGUGCGcgcggcucacUCGGGu -3'
miRNA:   3'- -UCuuCa---CCCGCCGCU---UCAUGC----------AGUCC- -5'
31005 5' -54 NC_006560.1 + 34558 0.74 0.620469
Target:  5'- cGggG-GGGCGGCcgGggGUGCGcgaCGGGg -3'
miRNA:   3'- uCuuCaCCCGCCG--CuuCAUGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 14777 0.74 0.630768
Target:  5'- gAGggGUGGG-GGCGGgcacGGgcucCGUCGGGg -3'
miRNA:   3'- -UCuuCACCCgCCGCU----UCau--GCAGUCC- -5'
31005 5' -54 NC_006560.1 + 33275 0.74 0.630768
Target:  5'- cGGggGccUGGGCGGCGggGguUGgGUCGcGGa -3'
miRNA:   3'- -UCuuC--ACCCGCCGCuuC--AUgCAGU-CC- -5'
31005 5' -54 NC_006560.1 + 88123 0.73 0.682116
Target:  5'- cGAAGUGGuCGGCGGAG-ACGUUgcggaAGGa -3'
miRNA:   3'- uCUUCACCcGCCGCUUCaUGCAG-----UCC- -5'
31005 5' -54 NC_006560.1 + 41120 0.72 0.702424
Target:  5'- cGAGGcagaGGGUGGUGAGGUGcCG-CAGGg -3'
miRNA:   3'- uCUUCa---CCCGCCGCUUCAU-GCaGUCC- -5'
31005 5' -54 NC_006560.1 + 132714 0.72 0.702424
Target:  5'- aAGAcccGGcuggGGGCGGCGGgaagaGGgcCGUCAGGa -3'
miRNA:   3'- -UCU---UCa---CCCGCCGCU-----UCauGCAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.