miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 5' -54 NC_006560.1 + 23 0.67 0.939667
Target:  5'- gGGcGGUucGGCGGCGGggggGGUGCGUUugGGGg -3'
miRNA:   3'- -UCuUCAc-CCGCCGCU----UCAUGCAG--UCC- -5'
31005 5' -54 NC_006560.1 + 2006 0.68 0.918759
Target:  5'- -----aGGGCGGCGgcGUccucgGCGUCGGc -3'
miRNA:   3'- ucuucaCCCGCCGCuuCA-----UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 2465 0.67 0.939667
Target:  5'- -----aGGcGCGGCGGcGGcGCGUCGGGg -3'
miRNA:   3'- ucuucaCC-CGCCGCU-UCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 3218 0.69 0.865542
Target:  5'- cGAGGgcgGcGGCGGCGGGcGgcgGCGUguGGg -3'
miRNA:   3'- uCUUCa--C-CCGCCGCUU-Ca--UGCAguCC- -5'
31005 5' -54 NC_006560.1 + 3328 0.68 0.912928
Target:  5'- cGGggGcgcGGGCgGGCGgcGUcgGCGUCGGc -3'
miRNA:   3'- -UCuuCa--CCCG-CCGCuuCA--UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 3481 0.66 0.963905
Target:  5'- -----cGGGCGGCGucg-GCGUCGGc -3'
miRNA:   3'- ucuucaCCCGCCGCuucaUGCAGUCc -5'
31005 5' -54 NC_006560.1 + 3890 0.66 0.960438
Target:  5'- cGgcGUcGGCGGCGucGgcgGCGUCGGc -3'
miRNA:   3'- uCuuCAcCCGCCGCuuCa--UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 4015 0.72 0.732413
Target:  5'- cGAGGccggGGGCGGCGgcG-GCGUCccGGGg -3'
miRNA:   3'- uCUUCa---CCCGCCGCuuCaUGCAG--UCC- -5'
31005 5' -54 NC_006560.1 + 4852 0.67 0.929697
Target:  5'- cGgcGccGGCGGCGAGGUucGCGUCGa- -3'
miRNA:   3'- uCuuCacCCGCCGCUUCA--UGCAGUcc -5'
31005 5' -54 NC_006560.1 + 5263 0.72 0.732413
Target:  5'- cGAGGacgcggcgGcGGCGGCGAGGUcgGCGUCGGc -3'
miRNA:   3'- uCUUCa-------C-CCGCCGCUUCA--UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 8547 0.66 0.956365
Target:  5'- uGGggGUGGggcgacuguggcuGCGGCGAucc-CGUCAGcGg -3'
miRNA:   3'- -UCuuCACC-------------CGCCGCUucauGCAGUC-C- -5'
31005 5' -54 NC_006560.1 + 8785 0.66 0.960438
Target:  5'- cGggGUGaGCGGaacgaCGGAGgggGCGUCGGa -3'
miRNA:   3'- uCuuCACcCGCC-----GCUUCa--UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 8874 0.69 0.880219
Target:  5'- uGggGUGGGggaGGCGggGggcuucGCG-CGGGc -3'
miRNA:   3'- uCuuCACCCg--CCGCuuCa-----UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 9078 0.75 0.579435
Target:  5'- gGGGAG-GGGCGGCGggGcgACGgCGGa -3'
miRNA:   3'- -UCUUCaCCCGCCGCuuCa-UGCaGUCc -5'
31005 5' -54 NC_006560.1 + 9639 0.69 0.87299
Target:  5'- aAGggGUGGGUgcGGcCGGAGggggGCGguaccgcggCAGGg -3'
miRNA:   3'- -UCuuCACCCG--CC-GCUUCa---UGCa--------GUCC- -5'
31005 5' -54 NC_006560.1 + 10231 0.86 0.145249
Target:  5'- uAGggGUGGGCGGCGggG-GCG-CGGGu -3'
miRNA:   3'- -UCuuCACCCGCCGCuuCaUGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 10370 0.69 0.865542
Target:  5'- uGGAGUuggGGGCGcGCGAcac-CGUCAGGa -3'
miRNA:   3'- uCUUCA---CCCGC-CGCUucauGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 11107 0.72 0.728455
Target:  5'- cGGAGGaGGGCGGgGggGgggggcucagcggGCGUCgAGGg -3'
miRNA:   3'- -UCUUCaCCCGCCgCuuCa------------UGCAG-UCC- -5'
31005 5' -54 NC_006560.1 + 11938 0.68 0.894001
Target:  5'- cAGGAG-GGGcCGGCGGgccaGGUccaGgGUCAGGu -3'
miRNA:   3'- -UCUUCaCCC-GCCGCU----UCA---UgCAGUCC- -5'
31005 5' -54 NC_006560.1 + 12026 0.66 0.967154
Target:  5'- cGgcGUGG-CGGCGggGgcacgcCGUCAGc -3'
miRNA:   3'- uCuuCACCcGCCGCuuCau----GCAGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.