miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 5' -54 NC_006560.1 + 12337 0.68 0.906856
Target:  5'- cGGAGGcaccucgGGGCuGGCGggGcggGCGUCucgacGGGg -3'
miRNA:   3'- -UCUUCa------CCCG-CCGCuuCa--UGCAG-----UCC- -5'
31005 5' -54 NC_006560.1 + 12714 0.68 0.905613
Target:  5'- cGGggGUGGG-GGCGggGcccuggauggugACGUCGucGGc -3'
miRNA:   3'- -UCuuCACCCgCCGCuuCa-----------UGCAGU--CC- -5'
31005 5' -54 NC_006560.1 + 14019 0.75 0.539007
Target:  5'- cGAGGgcccGGCGGaCGggGUcGCGUCGGGg -3'
miRNA:   3'- uCUUCac--CCGCC-GCuuCA-UGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 14556 0.67 0.948677
Target:  5'- gGGAGG-GGGCGGCGgcGcucACGccUCGGa -3'
miRNA:   3'- -UCUUCaCCCGCCGCuuCa--UGC--AGUCc -5'
31005 5' -54 NC_006560.1 + 14777 0.74 0.630768
Target:  5'- gAGggGUGGG-GGCGGgcacGGgcucCGUCGGGg -3'
miRNA:   3'- -UCuuCACCCgCCGCU----UCau--GCAGUCC- -5'
31005 5' -54 NC_006560.1 + 14872 0.66 0.963568
Target:  5'- cGggG-GGGCGGggaGAGGUcguucccgggcccGgGUCGGGg -3'
miRNA:   3'- uCuuCaCCCGCCg--CUUCA-------------UgCAGUCC- -5'
31005 5' -54 NC_006560.1 + 15028 0.66 0.967154
Target:  5'- cGggGUGcGGCGuCGGAGacucGCGcCGGGg -3'
miRNA:   3'- uCuuCAC-CCGCcGCUUCa---UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 15563 0.76 0.509327
Target:  5'- cAGGAGgcucugggGGGCGGCGGAG-ACGUaggcCAGGu -3'
miRNA:   3'- -UCUUCa-------CCCGCCGCUUCaUGCA----GUCC- -5'
31005 5' -54 NC_006560.1 + 17702 0.67 0.934803
Target:  5'- gGGucGUGGGCGGCGGccGGaaaaccgACGcccCGGGg -3'
miRNA:   3'- -UCuuCACCCGCCGCU--UCa------UGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 19607 0.69 0.880219
Target:  5'- cGGAGGcagacuccaGGGUGGCGuccGAGU-CGUCGGGc -3'
miRNA:   3'- -UCUUCa--------CCCGCCGC---UUCAuGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 21001 0.7 0.816617
Target:  5'- gGGAAGggcgGGGCGGCGGgcccgccccgaAGgGCGggcCGGGg -3'
miRNA:   3'- -UCUUCa---CCCGCCGCU-----------UCaUGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 21932 0.66 0.956747
Target:  5'- -----cGGGCGGCGAAGga-GagAGGa -3'
miRNA:   3'- ucuucaCCCGCCGCUUCaugCagUCC- -5'
31005 5' -54 NC_006560.1 + 25798 0.66 0.952828
Target:  5'- gAGGAGgGGGCGcGCGAGGgggaaGagGGGa -3'
miRNA:   3'- -UCUUCaCCCGC-CGCUUCaug--CagUCC- -5'
31005 5' -54 NC_006560.1 + 25958 0.7 0.825241
Target:  5'- cGAGGgccgcGGGgGGCGAGGgcCG-CGGGg -3'
miRNA:   3'- uCUUCa----CCCgCCGCUUCauGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 26498 0.69 0.887224
Target:  5'- gGGggGcGGGCGcGCGAGGggGCGg-GGGc -3'
miRNA:   3'- -UCuuCaCCCGC-CGCUUCa-UGCagUCC- -5'
31005 5' -54 NC_006560.1 + 26648 0.67 0.924349
Target:  5'- gGGggGgacgGGGCcGCGggGgggACGgggccgCGGGg -3'
miRNA:   3'- -UCuuCa---CCCGcCGCuuCa--UGCa-----GUCC- -5'
31005 5' -54 NC_006560.1 + 26802 0.68 0.916456
Target:  5'- gGGGAGagcgagaccgacgGGGCGcGCGggGgACGcCGGGg -3'
miRNA:   3'- -UCUUCa------------CCCGC-CGCuuCaUGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 28060 0.7 0.816617
Target:  5'- gGGGucGGUGGGCGGUccuGggGUGaGUCGGu -3'
miRNA:   3'- -UCU--UCACCCGCCG---CuuCAUgCAGUCc -5'
31005 5' -54 NC_006560.1 + 29137 0.67 0.934803
Target:  5'- gGGGAGUGGGCucccGGCGcauauaACGcCGGGg -3'
miRNA:   3'- -UCUUCACCCG----CCGCuuca--UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 30251 0.7 0.833687
Target:  5'- --cGGUGGGUGGCGgGAGgcCG-CGGGa -3'
miRNA:   3'- ucuUCACCCGCCGC-UUCauGCaGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.