Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31005 | 5' | -54 | NC_006560.1 | + | 47857 | 0.66 | 0.960438 |
Target: 5'- cGggGUccGGCGGCGGGccggGgGUCGGGg -3' miRNA: 3'- uCuuCAc-CCGCCGCUUca--UgCAGUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 23 | 0.67 | 0.939667 |
Target: 5'- gGGcGGUucGGCGGCGGggggGGUGCGUUugGGGg -3' miRNA: 3'- -UCuUCAc-CCGCCGCU----UCAUGCAG--UCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 61529 | 0.67 | 0.939667 |
Target: 5'- gGGAAGcUGGG-GGCGggGgcggggGCGccaaaCAGGg -3' miRNA: 3'- -UCUUC-ACCCgCCGCuuCa-----UGCa----GUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 29137 | 0.67 | 0.934803 |
Target: 5'- gGGGAGUGGGCucccGGCGcauauaACGcCGGGg -3' miRNA: 3'- -UCUUCACCCG----CCGCuuca--UGCaGUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 17702 | 0.67 | 0.934803 |
Target: 5'- gGGucGUGGGCGGCGGccGGaaaaccgACGcccCGGGg -3' miRNA: 3'- -UCuuCACCCGCCGCU--UCa------UGCa--GUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 33075 | 0.67 | 0.929697 |
Target: 5'- gAGggGaaGGCGGgGAAGgcggGCGagggCAGGg -3' miRNA: 3'- -UCuuCacCCGCCgCUUCa---UGCa---GUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 4852 | 0.67 | 0.929697 |
Target: 5'- cGgcGccGGCGGCGAGGUucGCGUCGa- -3' miRNA: 3'- uCuuCacCCGCCGCUUCA--UGCAGUcc -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 26648 | 0.67 | 0.924349 |
Target: 5'- gGGggGgacgGGGCcGCGggGgggACGgggccgCGGGg -3' miRNA: 3'- -UCuuCa---CCCGcCGCuuCa--UGCa-----GUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 135365 | 0.67 | 0.922698 |
Target: 5'- cGGAGUcgcgcggccacgcgGGGgGGCGGAGgcCG-CGGGg -3' miRNA: 3'- uCUUCA--------------CCCgCCGCUUCauGCaGUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 2465 | 0.67 | 0.939667 |
Target: 5'- -----aGGcGCGGCGGcGGcGCGUCGGGg -3' miRNA: 3'- ucuucaCC-CGCCGCU-UCaUGCAGUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 150352 | 0.67 | 0.939667 |
Target: 5'- gGGcGGUucGGCGGCGGggggGGUGCGUUugGGGg -3' miRNA: 3'- -UCuUCAc-CCGCCGCU----UCAUGCAG--UCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 32074 | 0.67 | 0.948677 |
Target: 5'- cAGggGccgcaGGGCgGGCGggG-GCGgCAGGu -3' miRNA: 3'- -UCuuCa----CCCG-CCGCuuCaUGCaGUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 102838 | 0.67 | 0.948677 |
Target: 5'- cGAGGgGGGCGGCGGuugGGgaaugGCGagcCGGGc -3' miRNA: 3'- uCUUCaCCCGCCGCU---UCa----UGCa--GUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 14556 | 0.67 | 0.948677 |
Target: 5'- gGGAGG-GGGCGGCGgcGcucACGccUCGGa -3' miRNA: 3'- -UCUUCaCCCGCCGCuuCa--UGC--AGUCc -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 65961 | 0.67 | 0.944741 |
Target: 5'- -cAGGcGGGCGGCGcGGUGCGgcgccucgaccugccCGGGa -3' miRNA: 3'- ucUUCaCCCGCCGCuUCAUGCa--------------GUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 146016 | 0.67 | 0.944291 |
Target: 5'- aGGccGUGGGCGGgGucucccGGGUAC-UCGGGc -3' miRNA: 3'- -UCuuCACCCGCCgC------UUCAUGcAGUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 82622 | 0.67 | 0.944291 |
Target: 5'- cGGcGGcUGGGCGGCGggG-GCGUUc-- -3' miRNA: 3'- -UCuUC-ACCCGCCGCuuCaUGCAGucc -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 39890 | 0.67 | 0.944291 |
Target: 5'- cGAGGcGGGUcuccgucguucgGGcCGggGUGCGcUCGGGu -3' miRNA: 3'- uCUUCaCCCG------------CC-GCuuCAUGC-AGUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 139844 | 0.67 | 0.94384 |
Target: 5'- cGAGGcGGGCucuccgcGGCGGAc--CGUCAGGg -3' miRNA: 3'- uCUUCaCCCG-------CCGCUUcauGCAGUCC- -5' |
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31005 | 5' | -54 | NC_006560.1 | + | 57045 | 0.68 | 0.918759 |
Target: 5'- cAGGAGcgGGGUGGUGAGGUcccacggaaccaGCGcCuGGg -3' miRNA: 3'- -UCUUCa-CCCGCCGCUUCA------------UGCaGuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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