miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 5' -54 NC_006560.1 + 150352 0.67 0.939667
Target:  5'- gGGcGGUucGGCGGCGGggggGGUGCGUUugGGGg -3'
miRNA:   3'- -UCuUCAc-CCGCCGCU----UCAUGCAG--UCC- -5'
31005 5' -54 NC_006560.1 + 147378 0.69 0.857882
Target:  5'- gGGggGUgcggGGGgGGCGGAGgggaGCG-CGGGc -3'
miRNA:   3'- -UCuuCA----CCCgCCGCUUCa---UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 147063 0.8 0.311952
Target:  5'- gGGAGGcGGGCGGCGAGucgGCGaUCAGGa -3'
miRNA:   3'- -UCUUCaCCCGCCGCUUca-UGC-AGUCC- -5'
31005 5' -54 NC_006560.1 + 146467 0.66 0.963905
Target:  5'- gAGGAGcGGGgGGCGGAGcgGCGgccgcgagCGGa -3'
miRNA:   3'- -UCUUCaCCCgCCGCUUCa-UGCa-------GUCc -5'
31005 5' -54 NC_006560.1 + 146016 0.67 0.944291
Target:  5'- aGGccGUGGGCGGgGucucccGGGUAC-UCGGGc -3'
miRNA:   3'- -UCuuCACCCGCCgC------UUCAUGcAGUCC- -5'
31005 5' -54 NC_006560.1 + 143700 0.71 0.771122
Target:  5'- aGGggGcGGGacgaGGCGAgagcgGGcGCGUCGGGg -3'
miRNA:   3'- -UCuuCaCCCg---CCGCU-----UCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 143477 0.7 0.816617
Target:  5'- cAGAAGUGGGCgGGCGcccgGCGUCc-- -3'
miRNA:   3'- -UCUUCACCCG-CCGCuucaUGCAGucc -5'
31005 5' -54 NC_006560.1 + 141714 0.66 0.952828
Target:  5'- cGggG-GGGgGGCGAAGgugg-CGGGa -3'
miRNA:   3'- uCuuCaCCCgCCGCUUCaugcaGUCC- -5'
31005 5' -54 NC_006560.1 + 141629 0.71 0.780508
Target:  5'- aGGAAG-GGGgGGgGAAGggACGgCAGGg -3'
miRNA:   3'- -UCUUCaCCCgCCgCUUCa-UGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 140491 0.72 0.712493
Target:  5'- gAGGAGguggGGGCGGCGggGgagaaGggcugCGGGg -3'
miRNA:   3'- -UCUUCa---CCCGCCGCuuCaug--Ca----GUCC- -5'
31005 5' -54 NC_006560.1 + 139844 0.67 0.94384
Target:  5'- cGAGGcGGGCucuccgcGGCGGAc--CGUCAGGg -3'
miRNA:   3'- uCUUCaCCCG-------CCGCUUcauGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 135365 0.67 0.922698
Target:  5'- cGGAGUcgcgcggccacgcgGGGgGGCGGAGgcCG-CGGGg -3'
miRNA:   3'- uCUUCA--------------CCCgCCGCUUCauGCaGUCC- -5'
31005 5' -54 NC_006560.1 + 133694 0.66 0.955595
Target:  5'- cGGGA-UGGGCGcgcgcagcacguccGCGAAGUACGgggcacgaaCAGGg -3'
miRNA:   3'- -UCUUcACCCGC--------------CGCUUCAUGCa--------GUCC- -5'
31005 5' -54 NC_006560.1 + 133582 0.76 0.499584
Target:  5'- cGAAGaGGGCGGCcAGGUcUGUCAGGu -3'
miRNA:   3'- uCUUCaCCCGCCGcUUCAuGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 133164 0.66 0.956747
Target:  5'- cGAAGUaguccucgGaGGCGGUGAGG-GCGUCcgcGGGg -3'
miRNA:   3'- uCUUCA--------C-CCGCCGCUUCaUGCAG---UCC- -5'
31005 5' -54 NC_006560.1 + 132714 0.72 0.702424
Target:  5'- aAGAcccGGcuggGGGCGGCGGgaagaGGgcCGUCAGGa -3'
miRNA:   3'- -UCU---UCa---CCCGCCGCU-----UCauGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 130429 0.7 0.82353
Target:  5'- cGAGGUGGGCGGCGcgccccucuucGUccccgcgcGCGUCGGc -3'
miRNA:   3'- uCUUCACCCGCCGCuu---------CA--------UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 126998 1.1 0.004227
Target:  5'- cAGAAGUGGGCGGCGAAGUACGUCAGGc -3'
miRNA:   3'- -UCUUCACCCGCCGCUUCAUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 126746 0.68 0.906856
Target:  5'- cGGAGGaGGacgacgagcGCGGCGAAcGUGgcCGUCAGGc -3'
miRNA:   3'- -UCUUCaCC---------CGCCGCUU-CAU--GCAGUCC- -5'
31005 5' -54 NC_006560.1 + 116528 0.7 0.841947
Target:  5'- uGGAGGcGGGCGGCGAug-GCGaCGGc -3'
miRNA:   3'- -UCUUCaCCCGCCGCUucaUGCaGUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.