miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 3' -58.3 NC_006560.1 + 69582 0.66 0.825182
Target:  5'- cGGCgcgGGCCGgcccAGcCCGcUCCGGGAg -3'
miRNA:   3'- -UCGa--CCGGCagu-UCuGGU-AGGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 146513 0.66 0.825182
Target:  5'- gAGCUGcGCCGggcGGGCCGgcgcgUCGGGGg -3'
miRNA:   3'- -UCGAC-CGGCaguUCUGGUa----GGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 70725 0.66 0.825182
Target:  5'- cGCgUGGCCG---AGuuCGUCCGGGAg -3'
miRNA:   3'- uCG-ACCGGCaguUCugGUAGGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 66520 0.66 0.825182
Target:  5'- uAGUUGGCgGUgAcGugCGUCC-GGACg -3'
miRNA:   3'- -UCGACCGgCAgUuCugGUAGGcCCUG- -5'
31006 3' -58.3 NC_006560.1 + 12861 0.66 0.816697
Target:  5'- cGUUGGCCGUCu---CCGUCaccucgggCGGGAg -3'
miRNA:   3'- uCGACCGGCAGuucuGGUAG--------GCCCUg -5'
31006 3' -58.3 NC_006560.1 + 138811 0.66 0.816697
Target:  5'- uGCgGcGCC-UgGGGACCA-CCGGGGCg -3'
miRNA:   3'- uCGaC-CGGcAgUUCUGGUaGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 86276 0.66 0.808048
Target:  5'- cGCaUGGCCGc---GGCC-UCCGGGAa -3'
miRNA:   3'- uCG-ACCGGCaguuCUGGuAGGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 130487 0.66 0.808048
Target:  5'- gGGCUGGUgGcgcggaUCGAGGCCGcgcCCGGcGGCc -3'
miRNA:   3'- -UCGACCGgC------AGUUCUGGUa--GGCC-CUG- -5'
31006 3' -58.3 NC_006560.1 + 35277 0.66 0.808048
Target:  5'- cGCgccgGGCgG-CGGGGCCcgggGUCCGGGGg -3'
miRNA:   3'- uCGa---CCGgCaGUUCUGG----UAGGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 56556 0.66 0.808048
Target:  5'- gAGCgGaGCCG-CGGGAgCgagggucgGUCCGGGGCg -3'
miRNA:   3'- -UCGaC-CGGCaGUUCUgG--------UAGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 84959 0.66 0.808048
Target:  5'- uGCUGuaCGUCAu--CCuccCCGGGACg -3'
miRNA:   3'- uCGACcgGCAGUucuGGua-GGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 67984 0.66 0.799243
Target:  5'- cGCgggGGCCG-CGGcGCCGUCgGGcGACg -3'
miRNA:   3'- uCGa--CCGGCaGUUcUGGUAGgCC-CUG- -5'
31006 3' -58.3 NC_006560.1 + 33205 0.66 0.799243
Target:  5'- aGGC-GGCCG-CGGGGCaga-CGGGGCa -3'
miRNA:   3'- -UCGaCCGGCaGUUCUGguagGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 98243 0.66 0.799243
Target:  5'- gGGCggGGUCGUCuccGCCGUCUcGGGCg -3'
miRNA:   3'- -UCGa-CCGGCAGuucUGGUAGGcCCUG- -5'
31006 3' -58.3 NC_006560.1 + 32410 0.66 0.799243
Target:  5'- gGGUgggGGCCGagGcccgcccaggGGGCCGgggggCCGGGGCu -3'
miRNA:   3'- -UCGa--CCGGCagU----------UCUGGUa----GGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 73779 0.66 0.796572
Target:  5'- cGGCUGGaCCGggugCGcgccgagggccagaAGGCCGUCgagGGGGCg -3'
miRNA:   3'- -UCGACC-GGCa---GU--------------UCUGGUAGg--CCCUG- -5'
31006 3' -58.3 NC_006560.1 + 5353 0.66 0.790289
Target:  5'- cGGCgGGCCGUCGu--CCGggUCCGGcGAg -3'
miRNA:   3'- -UCGaCCGGCAGUucuGGU--AGGCC-CUg -5'
31006 3' -58.3 NC_006560.1 + 104441 0.66 0.790289
Target:  5'- cGGCUGgcgcccGCCGUCGAGuCCcgCCGGc-- -3'
miRNA:   3'- -UCGAC------CGGCAGUUCuGGuaGGCCcug -5'
31006 3' -58.3 NC_006560.1 + 28397 0.66 0.790289
Target:  5'- cGUUGGuCCG-CGgguuGGGCCGgggcgggCCGGGGCg -3'
miRNA:   3'- uCGACC-GGCaGU----UCUGGUa------GGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 55459 0.66 0.790289
Target:  5'- gGGCgc-CCGgggCAGGGCCcgCCGGcGACg -3'
miRNA:   3'- -UCGaccGGCa--GUUCUGGuaGGCC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.