miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 3' -58.3 NC_006560.1 + 138229 0.66 0.790289
Target:  5'- cGCggGGCCGUCG---UCGUCCGGcaGACg -3'
miRNA:   3'- uCGa-CCGGCAGUucuGGUAGGCC--CUG- -5'
31006 3' -58.3 NC_006560.1 + 50914 0.67 0.771971
Target:  5'- cGCUGcagcCCGUCGAGGCC-UCCGcGGuCc -3'
miRNA:   3'- uCGACc---GGCAGUUCUGGuAGGC-CCuG- -5'
31006 3' -58.3 NC_006560.1 + 29059 0.67 0.771971
Target:  5'- cGCgucuccGGCCGgCGGGGCCcgcccGUCgGGGACc -3'
miRNA:   3'- uCGa-----CCGGCaGUUCUGG-----UAGgCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 22147 0.67 0.762624
Target:  5'- uGCUGGCCGcCAugguggaggAGACgGcCCGGGcGCu -3'
miRNA:   3'- uCGACCGGCaGU---------UCUGgUaGGCCC-UG- -5'
31006 3' -58.3 NC_006560.1 + 93968 0.67 0.762624
Target:  5'- uGCUgGGCUGUCugGAGGCguUCgGGGAg -3'
miRNA:   3'- uCGA-CCGGCAG--UUCUGguAGgCCCUg -5'
31006 3' -58.3 NC_006560.1 + 101350 0.67 0.762624
Target:  5'- cGcCUGGgCGUCGAGGCaCAgggcggcgaggCCGGGAa -3'
miRNA:   3'- uC-GACCgGCAGUUCUG-GUa----------GGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 32172 0.67 0.762624
Target:  5'- cGGCgccgagGGCgGgUCGAGGCCcgcCCGGGAg -3'
miRNA:   3'- -UCGa-----CCGgC-AGUUCUGGua-GGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 111218 0.67 0.753164
Target:  5'- cAGCUGGcCCG-CAacgugcAGGCCGUgCUGGGGg -3'
miRNA:   3'- -UCGACC-GGCaGU------UCUGGUA-GGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 39014 0.67 0.753164
Target:  5'- ---gGGCCca-GGGGCUGUCCGGGGCc -3'
miRNA:   3'- ucgaCCGGcagUUCUGGUAGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 28947 0.67 0.753164
Target:  5'- uGGCgc-CCGUCGGGGCCGccccaaCGGGGCg -3'
miRNA:   3'- -UCGaccGGCAGUUCUGGUag----GCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 54919 0.67 0.743599
Target:  5'- aGGCgcucgggGGCCGgggcGGCCAUCguCGGGGCu -3'
miRNA:   3'- -UCGa------CCGGCaguuCUGGUAG--GCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 76648 0.67 0.743599
Target:  5'- uGgaGGCCGcCGcGGCCGagUGGGACg -3'
miRNA:   3'- uCgaCCGGCaGUuCUGGUagGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 32071 0.67 0.743599
Target:  5'- gGGCaggGGCCG-CAGGGCgGgCgGGGGCg -3'
miRNA:   3'- -UCGa--CCGGCaGUUCUGgUaGgCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 148452 0.67 0.724191
Target:  5'- gGGCgGGCCGaCGG--UCGUCUGGGGCg -3'
miRNA:   3'- -UCGaCCGGCaGUUcuGGUAGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 83848 0.67 0.724191
Target:  5'- uGGCUGGCCcugCGGcGCC-UCCGGGcCg -3'
miRNA:   3'- -UCGACCGGca-GUUcUGGuAGGCCCuG- -5'
31006 3' -58.3 NC_006560.1 + 35515 0.68 0.714366
Target:  5'- cGgaGGCCGcgccucccaUUAGGGCCcgCgCGGGGCg -3'
miRNA:   3'- uCgaCCGGC---------AGUUCUGGuaG-GCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 51155 0.68 0.704473
Target:  5'- cGC-GGCgCG-CGAGGCCGccuuUCUGGGGCg -3'
miRNA:   3'- uCGaCCG-GCaGUUCUGGU----AGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 44255 0.68 0.694519
Target:  5'- gAGCgaGGCC-UCcgcGGCCAUCCGGG-Cg -3'
miRNA:   3'- -UCGa-CCGGcAGuu-CUGGUAGGCCCuG- -5'
31006 3' -58.3 NC_006560.1 + 11127 0.68 0.694519
Target:  5'- gGGCUcagcGGgCGUCgAGGGCC--CCGGGGCg -3'
miRNA:   3'- -UCGA----CCgGCAG-UUCUGGuaGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 56137 0.68 0.692522
Target:  5'- gGGC--GCUGUCGuAGACCAgccuuccgccggCCGGGACg -3'
miRNA:   3'- -UCGacCGGCAGU-UCUGGUa-----------GGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.