miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 3' -58.3 NC_006560.1 + 53641 0.7 0.553516
Target:  5'- cGGC-GGCuCGUugcCGGGGCCGcCCGGGACc -3'
miRNA:   3'- -UCGaCCG-GCA---GUUCUGGUaGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 18099 0.7 0.56346
Target:  5'- gAGCgGGCgGUCGcGGCguucugCGUCCGGGGCc -3'
miRNA:   3'- -UCGaCCGgCAGUuCUG------GUAGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 38414 0.7 0.57245
Target:  5'- uGGCUGGCCGUCAgcucgcaGGugCGaCUGGaGCa -3'
miRNA:   3'- -UCGACCGGCAGU-------UCugGUaGGCCcUG- -5'
31006 3' -58.3 NC_006560.1 + 132730 0.7 0.573451
Target:  5'- cGGCgggaagagGGCCGUCAGGAUCG---GGGGCg -3'
miRNA:   3'- -UCGa-------CCGGCAGUUCUGGUaggCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 105801 0.7 0.590527
Target:  5'- cGCUGGCgGUCuGGGCCAcgggcgagcuagcgUUCGGGuGCg -3'
miRNA:   3'- uCGACCGgCAGuUCUGGU--------------AGGCCC-UG- -5'
31006 3' -58.3 NC_006560.1 + 86175 0.7 0.590527
Target:  5'- cGCccaUGGCCGUCAgccccucggccgugAGGCCG--CGGGACa -3'
miRNA:   3'- uCG---ACCGGCAGU--------------UCUGGUagGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 140814 0.7 0.592542
Target:  5'- cGCUgGGCCGUgccgucccaCAGGACgGUauccaggCCGGGACa -3'
miRNA:   3'- uCGA-CCGGCA---------GUUCUGgUA-------GGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 12723 0.7 0.59355
Target:  5'- gGGCggGGCCcuggauggugacGUCGucGGCC-UCCGGGACg -3'
miRNA:   3'- -UCGa-CCGG------------CAGUu-CUGGuAGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 94733 0.69 0.602634
Target:  5'- uGGC-GGCCGUCGAGcuggcgcuguucgGCCG-CCGGGcCg -3'
miRNA:   3'- -UCGaCCGGCAGUUC-------------UGGUaGGCCCuG- -5'
31006 3' -58.3 NC_006560.1 + 91369 0.69 0.603644
Target:  5'- cGCUGGCCaagcUCGAGACCAUcaucacccaCCGcGACg -3'
miRNA:   3'- uCGACCGGc---AGUUCUGGUA---------GGCcCUG- -5'
31006 3' -58.3 NC_006560.1 + 118202 0.69 0.603644
Target:  5'- cGCUGGUg--CAgcGGGCCGUgCGGGACg -3'
miRNA:   3'- uCGACCGgcaGU--UCUGGUAgGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 32131 0.69 0.613759
Target:  5'- gGGCccggGGCCgGUCAcGGCCGggCGGGGCc -3'
miRNA:   3'- -UCGa---CCGG-CAGUuCUGGUagGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 1931 0.69 0.623888
Target:  5'- cGGCUcGCCGUCcGGGuCCcaGUCCGGGGu -3'
miRNA:   3'- -UCGAcCGGCAGuUCU-GG--UAGGCCCUg -5'
31006 3' -58.3 NC_006560.1 + 45785 0.69 0.623888
Target:  5'- gGGCUcGGuCCGcCGGGGCCuuuuggcccCCGGGGCg -3'
miRNA:   3'- -UCGA-CC-GGCaGUUCUGGua-------GGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 130683 0.69 0.623888
Target:  5'- cGCUGGCgGUCcgcaucGACa--CCGGGACg -3'
miRNA:   3'- uCGACCGgCAGuu----CUGguaGGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 118532 0.69 0.623888
Target:  5'- cGCUGGCCGgggGGGACCGccCCGGcuGGCu -3'
miRNA:   3'- uCGACCGGCag-UUCUGGUa-GGCC--CUG- -5'
31006 3' -58.3 NC_006560.1 + 118395 0.69 0.634023
Target:  5'- gGGCgGGCgGUUcGGGCCcgaccCCGGGGCg -3'
miRNA:   3'- -UCGaCCGgCAGuUCUGGua---GGCCCUG- -5'
31006 3' -58.3 NC_006560.1 + 100795 0.69 0.634023
Target:  5'- gGGCaucggGGCCGUCGgcggGGGCCAUagCGcGGGCg -3'
miRNA:   3'- -UCGa----CCGGCAGU----UCUGGUAg-GC-CCUG- -5'
31006 3' -58.3 NC_006560.1 + 107335 0.69 0.634023
Target:  5'- cAGCUGGCCGg--GGGCCcgCUcgcggaGGGGCc -3'
miRNA:   3'- -UCGACCGGCaguUCUGGuaGG------CCCUG- -5'
31006 3' -58.3 NC_006560.1 + 26246 0.69 0.644156
Target:  5'- aGGCcgGGCCGgaggGGGGCgCGUCgCGGGGCu -3'
miRNA:   3'- -UCGa-CCGGCag--UUCUG-GUAG-GCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.