Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31006 | 3' | -58.3 | NC_006560.1 | + | 90272 | 0.68 | 0.684514 |
Target: 5'- gGGCccUGGCCcgccuccucuUCGAGGCCGUCgUGGGGCc -3' miRNA: 3'- -UCG--ACCGGc---------AGUUCUGGUAG-GCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 42471 | 0.68 | 0.674467 |
Target: 5'- cGGCc-GCCGUCGGGGCgGUCgagGGGGCg -3' miRNA: 3'- -UCGacCGGCAGUUCUGgUAGg--CCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 15777 | 0.68 | 0.674467 |
Target: 5'- gGGCccgggGGCCGgCAGGGCCcggcgCCGGcGGCg -3' miRNA: 3'- -UCGa----CCGGCaGUUCUGGua---GGCC-CUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 106205 | 0.68 | 0.664386 |
Target: 5'- cGGCUGGCgG-CGAGGaucgccaCGUCCGGGcucGCg -3' miRNA: 3'- -UCGACCGgCaGUUCUg------GUAGGCCC---UG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 12040 | 0.68 | 0.664386 |
Target: 5'- gGGCacGCCGUCAgcuccucgacgaGGACCAcgCgGGGGCa -3' miRNA: 3'- -UCGacCGGCAGU------------UCUGGUa-GgCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 26871 | 0.69 | 0.65428 |
Target: 5'- cGGCgcccgUGGCgGgagagCGAGACCGacgggggCCGGGACg -3' miRNA: 3'- -UCG-----ACCGgCa----GUUCUGGUa------GGCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 99825 | 0.69 | 0.65428 |
Target: 5'- cAGCUGGuuGUaguGGGCgG-CCGGGAUc -3' miRNA: 3'- -UCGACCggCAgu-UCUGgUaGGCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 110323 | 0.69 | 0.65428 |
Target: 5'- uGGC-GGCCGcgCAGGAgaCGUuuGGGGCg -3' miRNA: 3'- -UCGaCCGGCa-GUUCUg-GUAggCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 26246 | 0.69 | 0.644156 |
Target: 5'- aGGCcgGGCCGgaggGGGGCgCGUCgCGGGGCu -3' miRNA: 3'- -UCGa-CCGGCag--UUCUG-GUAG-GCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 100795 | 0.69 | 0.634023 |
Target: 5'- gGGCaucggGGCCGUCGgcggGGGCCAUagCGcGGGCg -3' miRNA: 3'- -UCGa----CCGGCAGU----UCUGGUAg-GC-CCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 118395 | 0.69 | 0.634023 |
Target: 5'- gGGCgGGCgGUUcGGGCCcgaccCCGGGGCg -3' miRNA: 3'- -UCGaCCGgCAGuUCUGGua---GGCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 107335 | 0.69 | 0.634023 |
Target: 5'- cAGCUGGCCGg--GGGCCcgCUcgcggaGGGGCc -3' miRNA: 3'- -UCGACCGGCaguUCUGGuaGG------CCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 45785 | 0.69 | 0.623888 |
Target: 5'- gGGCUcGGuCCGcCGGGGCCuuuuggcccCCGGGGCg -3' miRNA: 3'- -UCGA-CC-GGCaGUUCUGGua-------GGCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 118532 | 0.69 | 0.623888 |
Target: 5'- cGCUGGCCGgggGGGACCGccCCGGcuGGCu -3' miRNA: 3'- uCGACCGGCag-UUCUGGUa-GGCC--CUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 130683 | 0.69 | 0.623888 |
Target: 5'- cGCUGGCgGUCcgcaucGACa--CCGGGACg -3' miRNA: 3'- uCGACCGgCAGuu----CUGguaGGCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 1931 | 0.69 | 0.623888 |
Target: 5'- cGGCUcGCCGUCcGGGuCCcaGUCCGGGGu -3' miRNA: 3'- -UCGAcCGGCAGuUCU-GG--UAGGCCCUg -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 32131 | 0.69 | 0.613759 |
Target: 5'- gGGCccggGGCCgGUCAcGGCCGggCGGGGCc -3' miRNA: 3'- -UCGa---CCGG-CAGUuCUGGUagGCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 91369 | 0.69 | 0.603644 |
Target: 5'- cGCUGGCCaagcUCGAGACCAUcaucacccaCCGcGACg -3' miRNA: 3'- uCGACCGGc---AGUUCUGGUA---------GGCcCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 118202 | 0.69 | 0.603644 |
Target: 5'- cGCUGGUg--CAgcGGGCCGUgCGGGACg -3' miRNA: 3'- uCGACCGgcaGU--UCUGGUAgGCCCUG- -5' |
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31006 | 3' | -58.3 | NC_006560.1 | + | 94733 | 0.69 | 0.602634 |
Target: 5'- uGGC-GGCCGUCGAGcuggcgcuguucgGCCG-CCGGGcCg -3' miRNA: 3'- -UCGaCCGGCAGUUC-------------UGGUaGGCCCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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