miRNA display CGI


Results 61 - 80 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 6069 0.66 0.694233
Target:  5'- -aGCAUCGCCGcgcccGCUCGC-GCC-CUCg -3'
miRNA:   3'- caUGUGGCGGCu----CGAGCGcCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 76238 0.66 0.691314
Target:  5'- gGUGCGCgccaagcagcagcgCGCCGAggccacggaccGCgUGaCGGCCGCCCu -3'
miRNA:   3'- -CAUGUG--------------GCGGCU-----------CGaGC-GCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 16041 0.66 0.684488
Target:  5'- -gGCACCcCCcGGCgUCGacccgguaguaGGCCACCCg -3'
miRNA:   3'- caUGUGGcGGcUCG-AGCg----------CCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 34306 0.66 0.684488
Target:  5'- uGUGuCugCGCCGAGg--GCcGCCGCCCc -3'
miRNA:   3'- -CAU-GugGCGGCUCgagCGcCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 50372 0.66 0.684488
Target:  5'- uGUuCGCgGCCGAGCUgGCGuucgacgagggcGaCUACCCg -3'
miRNA:   3'- -CAuGUGgCGGCUCGAgCGC------------C-GGUGGG- -5'
31006 5' -61 NC_006560.1 + 66002 0.66 0.684488
Target:  5'- -aGCACCGUgGGGaccgCGgguCGGCCGCCa -3'
miRNA:   3'- caUGUGGCGgCUCga--GC---GCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 83185 0.66 0.684488
Target:  5'- -gACGgaCGCgGGGCUgcCGgGGCUGCCCg -3'
miRNA:   3'- caUGUg-GCGgCUCGA--GCgCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 113204 0.66 0.684488
Target:  5'- cUGCACCGCCGGGgUgcgcuucgacCGCGuguacGCCACgCu -3'
miRNA:   3'- cAUGUGGCGGCUCgA----------GCGC-----CGGUGgG- -5'
31006 5' -61 NC_006560.1 + 9594 0.66 0.684488
Target:  5'- -gGCGCggcgaGCgGAGCgcggggCGCGGCC-CCUg -3'
miRNA:   3'- caUGUGg----CGgCUCGa-----GCGCCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 47268 0.66 0.684488
Target:  5'- -gGCGCCGCggacccgaaaGAGCgccugCGCGGCggacgcgcuCGCCCc -3'
miRNA:   3'- caUGUGGCGg---------CUCGa----GCGCCG---------GUGGG- -5'
31006 5' -61 NC_006560.1 + 52634 0.66 0.684488
Target:  5'- -aGC-CCGCCGGGCgag-GGCgACCCc -3'
miRNA:   3'- caUGuGGCGGCUCGagcgCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 54154 0.66 0.684488
Target:  5'- --cCACCGgCGAGg-CGaaccuGGCCGCCCu -3'
miRNA:   3'- cauGUGGCgGCUCgaGCg----CCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 69258 0.66 0.684488
Target:  5'- -gGCGCUGgaGGGCUUccuggccgcggGCGGCgGCCCc -3'
miRNA:   3'- caUGUGGCggCUCGAG-----------CGCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 84509 0.66 0.684488
Target:  5'- -gGCGuguUCGCCGcGCUCGCGcagaCGCCCu -3'
miRNA:   3'- caUGU---GGCGGCuCGAGCGCcg--GUGGG- -5'
31006 5' -61 NC_006560.1 + 90919 0.66 0.684488
Target:  5'- -aGCACCuGgCGAuGCUgUGCGGCUucucGCCCg -3'
miRNA:   3'- caUGUGG-CgGCU-CGA-GCGCCGG----UGGG- -5'
31006 5' -61 NC_006560.1 + 136397 0.66 0.684488
Target:  5'- cGUGCggcuGCCGCgGAGCU-G-GGCCAUCUu -3'
miRNA:   3'- -CAUG----UGGCGgCUCGAgCgCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 145049 0.66 0.684488
Target:  5'- cGUGcCGCCGCCGG----GCGGCCuccuCCCc -3'
miRNA:   3'- -CAU-GUGGCGGCUcgagCGCCGGu---GGG- -5'
31006 5' -61 NC_006560.1 + 12195 0.66 0.684488
Target:  5'- -gGCGCCGUccgccccgaCGGGCccCGCGGCCAggagggagUCCg -3'
miRNA:   3'- caUGUGGCG---------GCUCGa-GCGCCGGU--------GGG- -5'
31006 5' -61 NC_006560.1 + 22935 0.66 0.684488
Target:  5'- -gAgGCCGCCGGcGCgcccgccccgUGUGGgCGCCCg -3'
miRNA:   3'- caUgUGGCGGCU-CGa---------GCGCCgGUGGG- -5'
31006 5' -61 NC_006560.1 + 77943 0.66 0.684488
Target:  5'- -cGCGgucCCgGCCGGGC-CGCccccGGCCACCg -3'
miRNA:   3'- caUGU---GG-CGGCUCGaGCG----CCGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.