miRNA display CGI


Results 41 - 60 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 15510 0.66 0.703931
Target:  5'- --cCGCCcCCGAGUccCGgGGCCAgCCg -3'
miRNA:   3'- cauGUGGcGGCUCGa-GCgCCGGUgGG- -5'
31006 5' -61 NC_006560.1 + 30664 0.66 0.703931
Target:  5'- --cCGCCGCCccccGGCcgucUCGgGGCCcCCCg -3'
miRNA:   3'- cauGUGGCGGc---UCG----AGCgCCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 49740 0.66 0.703931
Target:  5'- -cACGCC-CCG-GCgguaCGCGGCCcacgcgcgcgaaACCCg -3'
miRNA:   3'- caUGUGGcGGCuCGa---GCGCCGG------------UGGG- -5'
31006 5' -61 NC_006560.1 + 79250 0.66 0.703931
Target:  5'- -cGCcCCGCCGcAGCcCGCGaGCCcgcgaacuCCCg -3'
miRNA:   3'- caUGuGGCGGC-UCGaGCGC-CGGu-------GGG- -5'
31006 5' -61 NC_006560.1 + 129599 0.66 0.703931
Target:  5'- gGUGCGgCGCgUGAcggacGCccuaaGCGGCCGCCCc -3'
miRNA:   3'- -CAUGUgGCG-GCU-----CGag---CGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 129926 0.66 0.703931
Target:  5'- -cGCGCgGCCGgaGGCgCGCaGCCcgGCCCc -3'
miRNA:   3'- caUGUGgCGGC--UCGaGCGcCGG--UGGG- -5'
31006 5' -61 NC_006560.1 + 132041 0.66 0.703931
Target:  5'- ---gGCCGCCGcGCUgCGCGGCggggCGCUg -3'
miRNA:   3'- caugUGGCGGCuCGA-GCGCCG----GUGGg -5'
31006 5' -61 NC_006560.1 + 2349 0.66 0.700058
Target:  5'- -cGCgGCCGUCGAGCgcgggcagcacggCGCGGCggUACUCg -3'
miRNA:   3'- caUG-UGGCGGCUCGa------------GCGCCG--GUGGG- -5'
31006 5' -61 NC_006560.1 + 93692 0.66 0.698118
Target:  5'- -gACGCCGCggucucgGAGCcgacCGCGGCCcggcagaagcuccugGCCCu -3'
miRNA:   3'- caUGUGGCGg------CUCGa---GCGCCGG---------------UGGG- -5'
31006 5' -61 NC_006560.1 + 10474 0.66 0.694233
Target:  5'- -cACGCCGCCucgGGGCcCGgGGCggggGCCCc -3'
miRNA:   3'- caUGUGGCGG---CUCGaGCgCCGg---UGGG- -5'
31006 5' -61 NC_006560.1 + 20191 0.66 0.694233
Target:  5'- -gGCgACCgGCCcgGGGCUCGuCGGCCGagCCg -3'
miRNA:   3'- caUG-UGG-CGG--CUCGAGC-GCCGGUg-GG- -5'
31006 5' -61 NC_006560.1 + 63838 0.66 0.694233
Target:  5'- -cGCAgCGCCGGGCcuccUCGCccgccaGCaCGCCCu -3'
miRNA:   3'- caUGUgGCGGCUCG----AGCGc-----CG-GUGGG- -5'
31006 5' -61 NC_006560.1 + 97639 0.66 0.694233
Target:  5'- ---gGCCGCCGGGUgagCGCGcGCaUGCUCg -3'
miRNA:   3'- caugUGGCGGCUCGa--GCGC-CG-GUGGG- -5'
31006 5' -61 NC_006560.1 + 108501 0.66 0.694233
Target:  5'- ---gGCCGCCGGGgggaggGCGGCCggcggcggGCCCg -3'
miRNA:   3'- caugUGGCGGCUCgag---CGCCGG--------UGGG- -5'
31006 5' -61 NC_006560.1 + 130321 0.66 0.694233
Target:  5'- -gGCgGCgGCgCGGGC-CGCGGCguCCCc -3'
miRNA:   3'- caUG-UGgCG-GCUCGaGCGCCGguGGG- -5'
31006 5' -61 NC_006560.1 + 42545 0.66 0.694233
Target:  5'- -aGCGCC-CCGGGgUCGCGcggggaGgCGCCCg -3'
miRNA:   3'- caUGUGGcGGCUCgAGCGC------CgGUGGG- -5'
31006 5' -61 NC_006560.1 + 46372 0.66 0.694233
Target:  5'- -gGCGCgggGCCGAGUaCGUGuCCGCCCc -3'
miRNA:   3'- caUGUGg--CGGCUCGaGCGCcGGUGGG- -5'
31006 5' -61 NC_006560.1 + 70695 0.66 0.694233
Target:  5'- -cACGCCGcCCGcGC-CGCcacgGGCC-CCCg -3'
miRNA:   3'- caUGUGGC-GGCuCGaGCG----CCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 106347 0.66 0.694233
Target:  5'- gGUGCGa-GCCGGGCUcggacuuugucCGCGcGCCGCUg -3'
miRNA:   3'- -CAUGUggCGGCUCGA-----------GCGC-CGGUGGg -5'
31006 5' -61 NC_006560.1 + 6069 0.66 0.694233
Target:  5'- -aGCAUCGCCGcgcccGCUCGC-GCC-CUCg -3'
miRNA:   3'- caUGUGGCGGCu----CGAGCGcCGGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.