miRNA display CGI


Results 21 - 40 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 16301 0.66 0.713571
Target:  5'- -gGCGCgGCgGGGCgCG-GGCCcgcGCCCg -3'
miRNA:   3'- caUGUGgCGgCUCGaGCgCCGG---UGGG- -5'
31006 5' -61 NC_006560.1 + 32610 0.66 0.713571
Target:  5'- -gGgGCUGCCccagGGGCUCGggaGGCCcgGCCCc -3'
miRNA:   3'- caUgUGGCGG----CUCGAGCg--CCGG--UGGG- -5'
31006 5' -61 NC_006560.1 + 35506 0.66 0.713571
Target:  5'- -cGCGCCGCCcggaGGC-CGCG-CCuCCCa -3'
miRNA:   3'- caUGUGGCGGc---UCGaGCGCcGGuGGG- -5'
31006 5' -61 NC_006560.1 + 44589 0.66 0.713571
Target:  5'- -gACACgG-CGAGcCUCGaCGGCCccgucgagGCCCa -3'
miRNA:   3'- caUGUGgCgGCUC-GAGC-GCCGG--------UGGG- -5'
31006 5' -61 NC_006560.1 + 53567 0.66 0.713571
Target:  5'- cGUGCGCgCGUCGcGCccgggCGCaGCgCGCCCg -3'
miRNA:   3'- -CAUGUG-GCGGCuCGa----GCGcCG-GUGGG- -5'
31006 5' -61 NC_006560.1 + 73867 0.66 0.713571
Target:  5'- -gGCGCUGCUG-GC-CGgGGaCGCCCg -3'
miRNA:   3'- caUGUGGCGGCuCGaGCgCCgGUGGG- -5'
31006 5' -61 NC_006560.1 + 146849 0.66 0.713571
Target:  5'- -gGCGgCGCgGGGCgggGCGGC-GCCCg -3'
miRNA:   3'- caUGUgGCGgCUCGag-CGCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 2219 0.66 0.713571
Target:  5'- -aGCGCCagguagaCGGGCcgcaGCGGCgCACCCa -3'
miRNA:   3'- caUGUGGcg-----GCUCGag--CGCCG-GUGGG- -5'
31006 5' -61 NC_006560.1 + 13781 0.66 0.713571
Target:  5'- -cGCGCCgGCuCGAucgcccucgguGUUCGgGGCCGCgCCg -3'
miRNA:   3'- caUGUGG-CG-GCU-----------CGAGCgCCGGUG-GG- -5'
31006 5' -61 NC_006560.1 + 27524 0.66 0.713571
Target:  5'- cGgcCGCCGUCGGucucucucGCgCGCGGCCuuCCg -3'
miRNA:   3'- -CauGUGGCGGCU--------CGaGCGCCGGugGG- -5'
31006 5' -61 NC_006560.1 + 47686 0.66 0.713571
Target:  5'- -cGguCCGCCu--CUCGCcGCCGCCCg -3'
miRNA:   3'- caUguGGCGGcucGAGCGcCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 70666 0.66 0.713571
Target:  5'- -cGCGCUGgCGgcGGCUgGCcGCCGCCUa -3'
miRNA:   3'- caUGUGGCgGC--UCGAgCGcCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 101285 0.66 0.713571
Target:  5'- -aGCGCCGCCuGGCg---GGCC-CCCg -3'
miRNA:   3'- caUGUGGCGGcUCGagcgCCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 125005 0.66 0.713571
Target:  5'- -gACGCCGgCGAcCcCGUGGUCGCCg -3'
miRNA:   3'- caUGUGGCgGCUcGaGCGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 56429 0.66 0.71261
Target:  5'- gGUGCGguugcccCgCGCCGGGgUCGaggaGGCgGCCCu -3'
miRNA:   3'- -CAUGU-------G-GCGGCUCgAGCg---CCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 98035 0.66 0.711648
Target:  5'- uGUACAcCCGCCagGAGaucaaggacaGCGGCCugCUg -3'
miRNA:   3'- -CAUGU-GGCGG--CUCgag-------CGCCGGugGG- -5'
31006 5' -61 NC_006560.1 + 35007 0.66 0.709722
Target:  5'- -cGgGCCgGCCGGGCgcccccuccggucCGCcGCCGCCCc -3'
miRNA:   3'- caUgUGG-CGGCUCGa------------GCGcCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 129926 0.66 0.703931
Target:  5'- -cGCGCgGCCGgaGGCgCGCaGCCcgGCCCc -3'
miRNA:   3'- caUGUGgCGGC--UCGaGCGcCGG--UGGG- -5'
31006 5' -61 NC_006560.1 + 129599 0.66 0.703931
Target:  5'- gGUGCGgCGCgUGAcggacGCccuaaGCGGCCGCCCc -3'
miRNA:   3'- -CAUGUgGCG-GCU-----CGag---CGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 79250 0.66 0.703931
Target:  5'- -cGCcCCGCCGcAGCcCGCGaGCCcgcgaacuCCCg -3'
miRNA:   3'- caUGuGGCGGC-UCGaGCGC-CGGu-------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.