miRNA display CGI


Results 21 - 40 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 3660 0.76 0.221109
Target:  5'- -gGCGCCGCCGGGgaCGCGGagguCGCCg -3'
miRNA:   3'- caUGUGGCGGCUCgaGCGCCg---GUGGg -5'
31006 5' -61 NC_006560.1 + 3768 0.75 0.237257
Target:  5'- -gGCGCCGCgCGgcgggaccgcGGCgcgCGCGGCCGCCa -3'
miRNA:   3'- caUGUGGCG-GC----------UCGa--GCGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 3942 0.7 0.463283
Target:  5'- -gGCGCCGCgGucggcGGCgaggGCGGCCGCCa -3'
miRNA:   3'- caUGUGGCGgC-----UCGag--CGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 4644 0.68 0.576287
Target:  5'- -gGCACgGgCCGcGGCcgCGCGGCCgugaagcgGCCCg -3'
miRNA:   3'- caUGUGgC-GGC-UCGa-GCGCCGG--------UGGG- -5'
31006 5' -61 NC_006560.1 + 4723 0.67 0.624453
Target:  5'- -cGCugCGCCcGGCggcgacgcccgucUCgGCGGCgGCCCg -3'
miRNA:   3'- caUGugGCGGcUCG-------------AG-CGCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 5079 0.69 0.528048
Target:  5'- cGU-CGCCGgCGuGCg-GCGcGCCGCCCg -3'
miRNA:   3'- -CAuGUGGCgGCuCGagCGC-CGGUGGG- -5'
31006 5' -61 NC_006560.1 + 5308 0.69 0.547188
Target:  5'- ---gGCCGCCGcguGCgacgGCGGCgGCCCc -3'
miRNA:   3'- caugUGGCGGCu--CGag--CGCCGgUGGG- -5'
31006 5' -61 NC_006560.1 + 5383 0.77 0.185703
Target:  5'- -cGCGCCGCCGAGCggagcgCGCGGCauggucggcacgguCGCCa -3'
miRNA:   3'- caUGUGGCGGCUCGa-----GCGCCG--------------GUGGg -5'
31006 5' -61 NC_006560.1 + 5424 0.66 0.681556
Target:  5'- --nCACCGCCGcuuccUUCGCGcuccucucuccuucGCCGCCCg -3'
miRNA:   3'- cauGUGGCGGCuc---GAGCGC--------------CGGUGGG- -5'
31006 5' -61 NC_006560.1 + 5589 0.66 0.674702
Target:  5'- -cGCgACUGCCGucuacacgaUCGCacGGCCGCCCg -3'
miRNA:   3'- caUG-UGGCGGCucg------AGCG--CCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 5693 0.66 0.67176
Target:  5'- -gGCGCCGcCCGucgaggaucgcauuAGCaUGCGGCCggcggcgccGCCCg -3'
miRNA:   3'- caUGUGGC-GGC--------------UCGaGCGCCGG---------UGGG- -5'
31006 5' -61 NC_006560.1 + 6069 0.66 0.694233
Target:  5'- -aGCAUCGCCGcgcccGCUCGC-GCC-CUCg -3'
miRNA:   3'- caUGUGGCGGCu----CGAGCGcCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 6109 0.69 0.528048
Target:  5'- -cGCGCCGCCGccgcccucaccGCgccugCGCGGCguCCCc -3'
miRNA:   3'- caUGUGGCGGCu----------CGa----GCGCCGguGGG- -5'
31006 5' -61 NC_006560.1 + 6332 0.72 0.370748
Target:  5'- -gACGCCGCgCGGGCgcccCGCcccGGCCcGCCCu -3'
miRNA:   3'- caUGUGGCG-GCUCGa---GCG---CCGG-UGGG- -5'
31006 5' -61 NC_006560.1 + 6401 0.7 0.481386
Target:  5'- -gACAUaaaGCCGgcGGCgcCGCGGCCgGCCCg -3'
miRNA:   3'- caUGUGg--CGGC--UCGa-GCGCCGG-UGGG- -5'
31006 5' -61 NC_006560.1 + 6452 0.68 0.605718
Target:  5'- --cCGCCGCCGGcccuccucGCUcCGCGcccaCCGCCCg -3'
miRNA:   3'- cauGUGGCGGCU--------CGA-GCGCc---GGUGGG- -5'
31006 5' -61 NC_006560.1 + 7266 0.7 0.481386
Target:  5'- cGUGCGCCGCCGAcC-C-CGGaCCugCCg -3'
miRNA:   3'- -CAUGUGGCGGCUcGaGcGCC-GGugGG- -5'
31006 5' -61 NC_006560.1 + 8027 0.71 0.42819
Target:  5'- -cACGCCGCCacguGCUCGUGcGCCggcaucuauuccACCCa -3'
miRNA:   3'- caUGUGGCGGcu--CGAGCGC-CGG------------UGGG- -5'
31006 5' -61 NC_006560.1 + 9594 0.66 0.684488
Target:  5'- -gGCGCggcgaGCgGAGCgcggggCGCGGCC-CCUg -3'
miRNA:   3'- caUGUGg----CGgCUCGa-----GCGCCGGuGGG- -5'
31006 5' -61 NC_006560.1 + 10161 0.67 0.634325
Target:  5'- gGUGCGCagggagaccgugaCGCCGuGCaCGUGcGCCACCUc -3'
miRNA:   3'- -CAUGUG-------------GCGGCuCGaGCGC-CGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.