miRNA display CGI


Results 21 - 40 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31006 5' -61 NC_006560.1 + 24194 0.78 0.146448
Target:  5'- -cGCGCgucguCGCCGAGCUCuCGGaCCACCCg -3'
miRNA:   3'- caUGUG-----GCGGCUCGAGcGCC-GGUGGG- -5'
31006 5' -61 NC_006560.1 + 24981 0.77 0.173927
Target:  5'- -gACACCGCCGuGC-CGCuGCCGCCg -3'
miRNA:   3'- caUGUGGCGGCuCGaGCGcCGGUGGg -5'
31006 5' -61 NC_006560.1 + 18021 0.77 0.178208
Target:  5'- -cGCGCCGCCcgcgacGGCUagCGCGGCCGCCg -3'
miRNA:   3'- caUGUGGCGGc-----UCGA--GCGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 72615 0.77 0.178208
Target:  5'- -gAC-CCGCCGGGCcgCGCGGCaCGCCg -3'
miRNA:   3'- caUGuGGCGGCUCGa-GCGCCG-GUGGg -5'
31006 5' -61 NC_006560.1 + 43685 0.77 0.178208
Target:  5'- -cGCGCUGcCCGAGCggggCGCGcGCCACCa -3'
miRNA:   3'- caUGUGGC-GGCUCGa---GCGC-CGGUGGg -5'
31006 5' -61 NC_006560.1 + 112256 0.77 0.182584
Target:  5'- -gGCAgCGCCG-GCUCGCccacGGCCGCCUc -3'
miRNA:   3'- caUGUgGCGGCuCGAGCG----CCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 5383 0.77 0.185703
Target:  5'- -cGCGCCGCCGAGCggagcgCGCGGCauggucggcacgguCGCCa -3'
miRNA:   3'- caUGUGGCGGCUCGa-----GCGCCG--------------GUGGg -5'
31006 5' -61 NC_006560.1 + 117360 0.77 0.187054
Target:  5'- -gGC-CCGCCGcGCcCgGCGGCCGCCCa -3'
miRNA:   3'- caUGuGGCGGCuCGaG-CGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 25044 0.77 0.191159
Target:  5'- -cGCGCCGCCGA-CUCgcccgcgcgcgagGCGGCCGCCg -3'
miRNA:   3'- caUGUGGCGGCUcGAG-------------CGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 123419 0.77 0.19162
Target:  5'- -aGCG-CGCCGAGUUCGCgGGCCgGCCCc -3'
miRNA:   3'- caUGUgGCGGCUCGAGCG-CCGG-UGGG- -5'
31006 5' -61 NC_006560.1 + 23412 0.76 0.201046
Target:  5'- -cGCAgCGCCGc-CUgGCGGCCGCCCu -3'
miRNA:   3'- caUGUgGCGGCucGAgCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 106666 0.76 0.201046
Target:  5'- -cGCGCCGucgcCCGAGCagaucgagCGCGGCCGCCg -3'
miRNA:   3'- caUGUGGC----GGCUCGa-------GCGCCGGUGGg -5'
31006 5' -61 NC_006560.1 + 112194 0.76 0.205908
Target:  5'- cUACGUCGCCGAGCUcccCGCGggccccGCCGCCCg -3'
miRNA:   3'- cAUGUGGCGGCUCGA---GCGC------CGGUGGG- -5'
31006 5' -61 NC_006560.1 + 77067 0.76 0.210371
Target:  5'- -aACACCGCCuGGGCUuauauagcgcguaCGCcGCCGCCCg -3'
miRNA:   3'- caUGUGGCGG-CUCGA-------------GCGcCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 67847 0.76 0.210872
Target:  5'- -gACGCCaGcCCGGGC-CGCGcGCCGCCCc -3'
miRNA:   3'- caUGUGG-C-GGCUCGaGCGC-CGGUGGG- -5'
31006 5' -61 NC_006560.1 + 111192 0.76 0.210872
Target:  5'- -cGCACCGCC-AGCUgCG-GGCCAUCCa -3'
miRNA:   3'- caUGUGGCGGcUCGA-GCgCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 35172 0.76 0.210872
Target:  5'- ---gGCCGCCGGGCcCGgGGCCccGCCCc -3'
miRNA:   3'- caugUGGCGGCUCGaGCgCCGG--UGGG- -5'
31006 5' -61 NC_006560.1 + 2941 0.76 0.215939
Target:  5'- -gACGCCGCCGAGCUCcucgccgggcaGCGGCgcguagagCACCa -3'
miRNA:   3'- caUGUGGCGGCUCGAG-----------CGCCG--------GUGGg -5'
31006 5' -61 NC_006560.1 + 106725 0.76 0.215939
Target:  5'- uGUGCACCuCCGAcgugGCg-GUGGCCACCCa -3'
miRNA:   3'- -CAUGUGGcGGCU----CGagCGCCGGUGGG- -5'
31006 5' -61 NC_006560.1 + 29737 0.76 0.215939
Target:  5'- -gACACggaCGCCGAGCUCuGCGaGCCcggGCCCg -3'
miRNA:   3'- caUGUG---GCGGCUCGAG-CGC-CGG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.